PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G825321_P01
Common NameGRAS31, LOC100382187
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 485aa    MW: 52611.8 Da    PI: 7.2682
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G825321_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS275.12.1e-841274843374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + L ++A a + g+   a+++Larl+++  p g+p+ R a+y+ eAL   l++      ++ +++ ts+ +++ +l a+k fs++sP+l+f+
  GRMZM5G825321_P01 127 DELAAAAMAAEVGNSIGAREILARLNQQLPPIGKPLLRSASYLREALLLALTD-----GHQGSTRVTSPLDVALKLGAYKSFSDLSPVLQFA 213
                        68999************************************************.....55566677777779******************** PP

               GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                        ++ta qa+l+++++   +++ iiDfd++ G+QW+++lq+La R+    ++ p+l++T+++s++s++  el+ t+e+L++fA  lg+pfef++
  GRMZM5G825321_P01 214 NFTATQALLDEIASTtsSCIRIIDFDLGVGGQWASFLQELAYRRgtgnGPLPMLKLTAFVSSASHHPLELHLTRENLSQFAVDLGIPFEFTA 305
                        **********998877799**********************99988867789**************************************** PP

               GRAS 181 lvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                        +   +l+++++ eL   + +E++aV+l +          +l+     +L+lvk+l Pk+vv +++ +d+++ +F ++f+++++ ++ l+dsl
  GRMZM5G825321_P01 306 I---NLDAFDPAELIAPSaDEVVAVCLPVGCSART---PPLPM----LLQLVKQLAPKIVVAIDHGSDRGDLPFSQHFMNCFQSCMFLLDSL 387
                        9...999***999955547********99766554...56666....********************************************* PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        +a  ++++++++k+Er+l++++++++v  + ++     e+++ Wr+ +++aGF pvpls+ a++qa++ll++v+++g++ve+    l l+W+
  GRMZM5G825321_P01 388 DAA-GTNADAASKIERFLIQPRVEDAVLGRRKA-----EKAMAWRAVFTSAGFAPVPLSNLAEAQADCLLKRVQVRGFHVEKCGMGLALYWQ 473
                        999.8999*******************988887.....999*************************************************** PP

               GRAS 364 drpLvsvSaWr 374
                        + +LvsvSaWr
  GRMZM5G825321_P01 474 RGELVSVSAWR 484
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.64499464IPR005202Transcription factor GRAS
PfamPF035147.5E-82127484IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020127anatomyprimary root
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MRPPPPPAAT TMRFHDGADI KPPLLGVPSA GLLHQHQTLP AASFFMPLPS FPDHQHQPHL  60
PPPPKRHHSM PDNLFLLQNQ LQPPPSQGLP FPPLHTTTPF QLQPPLQPPR GAMKTTPAAQ  120
QHQQLLDELA AAAMAAEVGN SIGAREILAR LNQQLPPIGK PLLRSASYLR EALLLALTDG  180
HQGSTRVTSP LDVALKLGAY KSFSDLSPVL QFANFTATQA LLDEIASTTS SCIRIIDFDL  240
GVGGQWASFL QELAYRRGTG NGPLPMLKLT AFVSSASHHP LELHLTRENL SQFAVDLGIP  300
FEFTAINLDA FDPAELIAPS ADEVVAVCLP VGCSARTPPL PMLLQLVKQL APKIVVAIDH  360
GSDRGDLPFS QHFMNCFQSC MFLLDSLDAA GTNADAASKI ERFLIQPRVE DAVLGRRKAE  420
KAMAWRAVFT SAGFAPVPLS NLAEAQADCL LKRVQVRGFH VEKCGMGLAL YWQRGELVSV  480
SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-2420048480375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.957650.0ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G825321
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G825321_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0694470.0BT069447.1 Zea mays full-length cDNA clone ZM_BFb0134J07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168417.10.0uncharacterized protein LOC100382187
TrEMBLC0PMC80.0C0PMC8_MAIZE; GRAS transcription factor
STRINGGRMZM5G825321_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-93GRAS family protein