PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G823157_P01
Common NameLOC103627587
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 484aa    MW: 50805.4 Da    PI: 6.0964
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G823157_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30222280259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  GRMZM5G823157_P01 222 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPSLLVITYNSEHNHP 280
                        699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.684216282IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-31218282IPR003657WRKY domain
SuperFamilySSF1182904.18E-26219282IPR003657WRKY domain
SMARTSM007747.8E-38221281IPR003657WRKY domain
PfamPF031067.4E-26223280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MCDYFLQRMD QGDHHHHHQA GDLTDVVRAG GAMHQAAVAE LPSADTGWQL PAEPAAGACL  60
FPPPQPSSSD CDGFADAFAG LPDPFASDFR TSSSSGVGLC PADDFFDFEA PAAAAAGGGA  120
RRGGGVLAGA QMPALSPREI RPYPVTMGGD TVKIGAPTMM PGLAVGPPCC AFDAVAGMQM  180
PSPHAHGGGI KRRKNQARKV VCIPAPAPSS AGGRTTGEVV PSDLWAWRKY GQKPIKGSPY  240
PRGYYRCSSS KGCPARKQVE RSRTDPSLLV ITYNSEHNHP WPTQRNALAG STRSHHAKSG  300
KNSSSHSLQK PNLKAEPEHH QASEAVPSYA TTATAATTTS TTTTATTSTT SNSTPPETVA  360
AVKEEAMVGS EVEKGTDHDA SVLLDHGDLM QQMFSQSYYR PKIPEASGGH HADDFFADLA  420
ELESDPMSLI FPGGDPGKKG RMSSESLGMG TDPLFNMLDW GASATDVAAT SAGSSFEQDE  480
EWLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-22194283280Disease resistance protein RRS1
5w3x_D1e-22194283280Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G823157
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G823157_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646113.10.0probable WRKY transcription factor 14
TrEMBLA0A1D6HGS20.0A0A1D6HGS2_MAIZE; Putative WRKY transcription factor 14
STRINGGRMZM5G823157_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-63WRKY DNA-binding protein 35