PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G822829_P03 | ||||||||
Common Name | S, ZEAMMB73_424664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 610aa MW: 66398.6 Da PI: 4.778 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.7e-13 | 415 | 462 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + Er+RR+++N+ f L++llP+ +++Ka+iL +++ Y+k+Lq GRMZM5G822829_P03 415 KNHVMSERKRREKLNEMFLVLKSLLPSiH------RVNKASILAETIAYLKELQ 462 6899***********************66......9*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.1E-44 | 25 | 204 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.567 | 412 | 461 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.39E-16 | 415 | 466 | No hit | No description |
SuperFamily | SSF47459 | 7.07E-18 | 415 | 482 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-10 | 415 | 462 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-16 | 416 | 473 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-15 | 418 | 467 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MALSASRVQQ AEELLQRPAE RQLMRSQLAA AARSINWSYA LFWSISDTQP GVLTWTDGFY 60 NGEVKTRKIS NSVELTSDHL VMQRSDQLRE LYEALLSGEG DRRAAPARPA GSLSPEDLGD 120 TEWYYVVSMT YAFRPGQGLP GRSFASDEHV WLCNAHLAGS KAFPRALLAK SILCIPVMGG 180 VLELGTTDTV PEAPDLVSRA TAAFWEPQCP TYSEEPSSSP SGRANETGEA AADDGTFAFE 240 ELDHNNGMDI EAMTAAGGHG QEEELRLREA EALSDDASLE HITKEIEEFY SLCDEMDLQA 300 LPLPLEDGWT VDASNFEVPC SSPQPAPPPV DRATANVAAD ASRAPVYGSR ATSFMAWTRS 360 SQQSSCSDDA APAAVVPAIE EPQRLLKKVV AGGGAWESCG GATGAAQEMS GTGTKNHVMS 420 ERKRREKLNE MFLVLKSLLP SIHRVNKASI LAETIAYLKE LQRRVQELES SREPASRPSE 480 TTTRLITRPS RGNNESVRKE VCAGSKRKSP ELGRDDVERP PVLIMDAGTS NVTVTVSDKD 540 VLLEVQCRWE ELLMTRVFDA IKSLHLDVLS VQASAPDGFM GLKIRAQFAG SGAVVPWMIS 600 EALRKAIGKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 8e-19 | 36 | 204 | 23 | 192 | Transcription factor MYC3 |
4rqw_B | 8e-19 | 36 | 204 | 23 | 192 | Transcription factor MYC3 |
4rru_A | 2e-18 | 36 | 200 | 62 | 227 | Transcription factor MYC3 |
4rs9_A | 8e-19 | 36 | 204 | 23 | 192 | Transcription factor MYC3 |
4ywc_A | 2e-18 | 36 | 200 | 62 | 227 | Transcription factor MYC3 |
4ywc_B | 2e-18 | 36 | 200 | 62 | 227 | Transcription factor MYC3 |
4yz6_A | 8e-19 | 36 | 204 | 23 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 420 | 425 | ERKRRE |
2 | 421 | 426 | RKRREK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G822829 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G822829_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X60706 | 0.0 | X60706.1 Maize SN mRNA, involved in tissue-specific anthocyanin expression. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105339.2 | 0.0 | anthocyanin regulatory R-S protein | ||||
Refseq | NP_001106073.2 | 0.0 | anthocyanin regulatory R-S protein | ||||
Refseq | XP_008661283.1 | 0.0 | anthocyanin regulatory R-S protein isoform X1 | ||||
Refseq | XP_008661285.1 | 0.0 | anthocyanin regulatory R-S protein isoform X1 | ||||
Refseq | XP_008661286.1 | 0.0 | anthocyanin regulatory R-S protein isoform X1 | ||||
Refseq | XP_008661287.1 | 0.0 | anthocyanin regulatory R-S protein isoform X1 | ||||
Refseq | XP_008661288.1 | 0.0 | anthocyanin regulatory R-S protein isoform X1 | ||||
Swissprot | P13027 | 0.0 | ARRS_MAIZE; Anthocyanin regulatory R-S protein | ||||
TrEMBL | Q9M4A8 | 0.0 | Q9M4A8_MAIZE; Transcription factor | ||||
STRING | GRMZM5G822829_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP932 | 33 | 109 | Representative plant | OGRP2447 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 5e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G822829_P03 |
Publications ? help Back to Top | |||
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