PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G822829_P01
Common NameS, Z138B04_Z333J11.11, ZEAMMB73_424664
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 585aa    MW: 63507.4 Da    PI: 4.7736
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G822829_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-13390437355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        ++h + Er+RR+++N+ f  L++llP+        +++Ka+iL +++ Y+k+Lq
  GRMZM5G822829_P01 390 KNHVMSERKRREKLNEMFLVLKSLLPSiH------RVNKASILAETIAYLKELQ 437
                        6899***********************66......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-3523179IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.567387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10390437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.62E-16390441No hitNo description
SuperFamilySSF474596.67E-18390457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-16391448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MESLGGSQIS GEVGLLQQRL EKKLSRVLTW TDGFYNGEVK TRKISNSVEL TSDHLVMQRS  60
DQLRELYEAL LSGEGDRRAA PARPAGSLSP EDLGDTEWYY VVSMTYAFRP GQGLPGRSFA  120
SDEHVWLCNA HLAGSKAFPR ALLAKSILCI PVMGGVLELG TTDTVPEAPD LVSRATAAFW  180
EPQCPTYSEE PSSSPSGRAN ETGEAAADDG TFAFEELDHN NGMDIEAMTA AGGHGQEEEL  240
RLREAEALSD DASLEHITKE IEEFYSLCDE MDLQALPLPL EDGWTVDASN FEVPCSSPQP  300
APPPVDRATA NVAADASRAP VYGSRATSFM AWTRSSQQSS CSDDAAPAAV VPAIEEPQRL  360
LKKVVAGGGA WESCGGATGA AQEMSGTGTK NHVMSERKRR EKLNEMFLVL KSLLPSIHRV  420
NKASILAETI AYLKELQRRV QELESSREPA SRPSETTTRL ITRPSRGNNE SVRKEVCAGS  480
KRKSPELGRD DVERPPVLIM DAGTSNVTVT VSDKDVLLEV QCRWEELLMT RVFDAIKSLH  540
LDVLSVQASA PDGFMGLKIR AQFAGSGAVV PWMISEALRK AIGKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-142717946192Transcription factor MYC3
4rqw_B6e-142717946192Transcription factor MYC3
4rs9_A6e-142717946192Transcription factor MYC3
4yz6_A6e-142717946192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1395400ERKRRE
2396401RKRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G822829
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G822829_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX607060.0X60706.1 Maize SN mRNA, involved in tissue-specific anthocyanin expression.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105339.20.0anthocyanin regulatory R-S protein
RefseqNP_001106073.20.0anthocyanin regulatory R-S protein
RefseqXP_008661283.10.0anthocyanin regulatory R-S protein isoform X1
RefseqXP_008661285.10.0anthocyanin regulatory R-S protein isoform X1
RefseqXP_008661286.10.0anthocyanin regulatory R-S protein isoform X1
RefseqXP_008661287.10.0anthocyanin regulatory R-S protein isoform X1
RefseqXP_008661288.10.0anthocyanin regulatory R-S protein isoform X1
SwissprotP130270.0ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLQ8S4830.0Q8S483_MAIZE; R1-B73
STRINGGRMZM5G822829_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.13e-42bHLH family protein
Publications ? help Back to Top
  1. Swigonov
    Close split of sorghum and maize genome progenitors.
    Genome Res., 2004. 14(10A): p. 1916-23
    [PMID:15466289]
  2. Lai J, et al.
    Gene loss and movement in the maize genome.
    Genome Res., 2004. 14(10A): p. 1924-31
    [PMID:15466290]
  3. Swigonov
    Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum.
    Genetics, 2005. 169(2): p. 891-906
    [PMID:15489523]
  4. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  5. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  6. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  7. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]