PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G821439_P01
Common Namecl37268_1, GRAS49
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 570aa    MW: 64511.1 Da    PI: 6.3587
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G821439_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4256.1e-1302005692373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL++cAea+s++  e+  +l+++ +  +s +g+p+qRl ay++e+L ar a+s++++y+al+++e +   s e l+++k++++++P+lkf
  GRMZM5G821439_P01 200 KQLLTKCAEALSEERIEEFLNLVQQARGVVSITGEPIQRLGAYLLEGLVARHANSGTNIYRALKCREPE---SNELLSYMKILYNICPYLKF 288
                        689*****************************************************************9...99****************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        ++++aN aI ea+ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e l  +g+ L+++ ee+++p+ef++l  
  GRMZM5G821439_P01 289 GYMAANGAIAEALRNEDRIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLDLVGKMLKSMSEEFRIPLEFTPLPG 380
                        *********************************************************999999**************************977 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                           ++++ e+L++++gEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf+e+l+yysa+f+s++++l
  GRMZM5G821439_P01 381 IYATQVTKEMLDIRSGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFTETLDYYSAMFESIDTNL 472
                        79999*************************************************************************************** PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        pr+++eri+vE+++l+++ivn++aceg++r+erhe l+kWr+rl++aGF+p+pls+++++ ++ ll+ ++ d y++ee++g+++lgWk+r+L
  GRMZM5G821439_P01 473 PRDNKERINVEQHCLAKDIVNIIACEGKDRVERHELLGKWRSRLTMAGFRPYPLSSYVNSVIRKLLACYS-DKYTLEEKDGAMLLGWKNRKL 563
                        ******************************************************************9999.55******************* PP

               GRAS 368 vsvSaW 373
                        +s+SaW
  GRMZM5G821439_P01 564 ISASAW 569
                        ****** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.646173551IPR005202Transcription factor GRAS
PfamPF035142.1E-127200569IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDLHQLLKYR LTGANVYYEF PTENNLANTP WPASPLKSEF SSSSYTPLSS QLECDNLSAL  60
SNTPDNQSST ETISAQSISP LEVDSSYKQA AILRENTQVR PDPLYTTSRH NMQHALREIE  120
TVLMAPDADD AATSTKHEFE EHKPAQLMRQ RSRTWSHESR QPSPGVVRTQ LASGYPTASY  180
EFRPEKRLRE LREDPQSMVK QLLTKCAEAL SEERIEEFLN LVQQARGVVS ITGEPIQRLG  240
AYLLEGLVAR HANSGTNIYR ALKCREPESN ELLSYMKILY NICPYLKFGY MAANGAIAEA  300
LRNEDRIHII DFQIAQGTQW ITLIQALAAR PGGPPHVRIT GIDDPVSEYA RGEGLDLVGK  360
MLKSMSEEFR IPLEFTPLPG IYATQVTKEM LDIRSGEALA VNFTLQLHHT PDESVDVNNP  420
RDGLLRMVKG LSPKVTTLVE QESHTNTTPF LMRFTETLDY YSAMFESIDT NLPRDNKERI  480
NVEQHCLAKD IVNIIACEGK DRVERHELLG KWRSRLTMAG FRPYPLSSYV NSVIRKLLAC  540
YSDKYTLEEK DGAMLLGWKN RKLISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-681835693378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.225360.0meristem| ovary| pollen| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G821439
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G821439_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419700.0BT041970.1 Zea mays full-length cDNA clone ZM_BFb0091M24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141745.10.0uncharacterized protein LOC100273879
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLB4FXY20.0B4FXY2_MAIZE; GRAS transcription factor
STRINGGRMZM5G821439_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Representative plantOGRP8948915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]