PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G818643_P01 | ||||||||
Common Name | bHLH86, LOC100383089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 434aa MW: 45645.9 Da PI: 6.2501 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.2e-09 | 262 | 310 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq GRMZM5G818643_P01 262 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 310 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.41E-17 | 257 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.02E-11 | 257 | 314 | No hit | No description |
PROSITE profile | PS50888 | 15.65 | 259 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 260 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-7 | 262 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-11 | 265 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MDMNESGEKG MEGNASSGIP VDWQTQFSAA AFSCAPPQQQ QVPMMDSAFA SAGLWASTSQ 60 AMALSDAGGR SAARAGFLAP VPGFLPQGLA HFPVDSGFIE RAARASCFGG GGGGGVMAAF 120 GAAADHQPMN SAFSGSSEAL LDHQRTKDGS DKGEPELGRN GHDGVLSSEA AAAGDCSSKG 180 TSDSKKRRRP NEVMGGDQVQ SSNLPADSAN ESVHSKDKGE ESSLATTTTG PGKSKGKGAR 240 ETSESQKEDY IHVRARRGQA TNSHSLAERL RREKISERMK LLQDLVPGCS KVTGKAVMLD 300 EIINYVQSLQ RQVEFLSMKL ATVNPRLDLN IEGLLSKDLL RFPGVPSSSL GFSPEMMHPQ 360 LQLSQPGLIQ GGAAGMANPD VFRRIMQAQL SAKDGSQMPP HALNGAFSDV AQQQMAYPSS 420 QDLSIGPSQD GFQM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.3222 | 0.0 | ear| endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G818643 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G818643_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726790 | 0.0 | KJ726790.1 Zea mays clone pUT2275 bHLH transcription factor (bHLH86) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353738.1 | 0.0 | uncharacterized protein LOC100383089 | ||||
TrEMBL | A0A060CUY1 | 0.0 | A0A060CUY1_MAIZE; BHLH transcription factor (Fragment) | ||||
STRING | GRMZM5G818643_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2909 | 37 | 85 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G818643_P01 |