PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G816457_P01
Common NameLOC100383070, WRKY72
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 703aa    MW: 74817.3 Da    PI: 6.7965
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G816457_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.5e-31283340260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +Dgy+WrKYGqK+vk se+prsY++Ct+++C vkkkvers+ +++++ei+Y+g Hnh+k
  GRMZM5G816457_P01 283 EDGYSWRKYGQKQVKHSEYPRSYFKCTHPNCLVKKKVERSH-EGHITEIIYKGAHNHPK 340
                        8****************************************.***************85 PP
2WRKY1048.3e-33490548159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe
  GRMZM5G816457_P01 490 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYPGCVVRKHVERASHDLKSVITTYEGRHNHE 548
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-27275341IPR003657WRKY domain
SuperFamilySSF1182905.23E-25276341IPR003657WRKY domain
PROSITE profilePS5081122.068277341IPR003657WRKY domain
SMARTSM007747.4E-35282340IPR003657WRKY domain
PfamPF031062.2E-23283339IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-36475550IPR003657WRKY domain
SuperFamilySSF1182909.94E-29482550IPR003657WRKY domain
PROSITE profilePS5081137.218485550IPR003657WRKY domain
SMARTSM007741.8E-37490549IPR003657WRKY domain
PfamPF031061.5E-24491548IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MEGHVAMEWN DPNPGPESLT SFQTEAVRPD TAGGHSNDDV EAGFEKHGLA VTVRPPEEEA  60
RSVPLTPQLG QKSSPGSSLA ERMQARAGFM VSKLNMPFST AAGADNSVPE VPSPYLTIPP  120
GLSPATLLES PVFVSNSMGQ ASPTTGTLFM FGSTNDNDPI RFGGGPPSVG DGPNAFPFKP  180
LDLKSSHYTA EAMKEQNTKS SVKTETKILT VQEASLLSQL NQLNHNSQTI INSGGPHDPK  240
LSRPASGAGA GNEHISPPDH GQTAEESDAR EDYPAMATTT PAEDGYSWRK YGQKQVKHSE  300
YPRSYFKCTH PNCLVKKKVE RSHEGHITEI IYKGAHNHPK PTQSRRPGVQ PVHPFGDSAQ  360
ADAADNLGSQ ANALDANQPR RAGVQDGMDA TSSPSVPIER CDSPASMQVD SATRFGSPEG  420
ADVTSVSDEV GGDDRVTRGS MSQGGADAEG DELECKRRKL ESYAIDMSTA SRAVREPRVV  480
IQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTYPG CVVRKHVERA SHDLKSVITT  540
YEGRHNHEVP AARNSGHPGT AAATGAGGPR RLEHPSLRDG LMGHLGGCGV PFGLPPPRDP  600
LAPMGNYPTY ASSIPLGGAG PTSLPSLPVP AGTLSAVDGL KLPMLAPSSL QQHPLLRHRQ  660
AMQAAGLVAP KDDVKVEGNV AGGAAPSVYQ QMMCSGLRLR QQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35283551878Probable WRKY transcription factor 4
2lex_A1e-35283551878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G816457
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G816457_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0660940.0BT066094.1 Zea mays full-length cDNA clone ZM_BFb0304M03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169214.10.0uncharacterized protein LOC100383070
RefseqXP_008668376.10.0putative WRKY DNA-binding domain superfamily protein isoform X1
TrEMBLC0PCS50.0C0PCS5_MAIZE; Putative WRKY transcription factor 34
STRINGGRMZM5G816457_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-112WRKY DNA-binding protein 2