PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G816314_P01
Common NameLOC103627503
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 228aa    MW: 23649.2 Da    PI: 5.3008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G816314_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-184998255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  GRMZM5G816314_P01 49 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 98
                       69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-124998IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2149107IPR016177DNA-binding domain
PROSITE profilePS5103222.95849106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3249107IPR001471AP2/ERF domain
SMARTSM003806.8E-3849112IPR001471AP2/ERF domain
PRINTSPR003671.3E-105061IPR001471AP2/ERF domain
CDDcd000181.06E-2850108No hitNo description
PRINTSPR003671.3E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAMDSSSSGS EPTSSSSAEA PASPTASSSE SSAAGSKKRR RSKDGHHPTY RGVRMRAWGK  60
WVSEIREPRK KSRIWLGTFA TAEMAARAHD VAALAIKGRA AHLNFPELAN DLPRPATAAP  120
KDVQAAAALA AAADFQAPAN AAAATDPDDG PAAAADSASA SPPPPPPQLD NPDDALFDLP  180
DLLLDLRHGA SSCQLSCAPS WYDDACFSGA GAGAGALFRL EEPLLWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18471101276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1250631e-88shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G816314
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G816314_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282621e-137KJ728262.1 Zea mays clone pUT6539 AP2-EREBP transcription factor (EREB176) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646012.11e-159ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ71e-52ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1D6HF231e-158A0A1D6HF23_MAIZE; Ethylene-responsive transcription factor ERF035
TrEMBLA0A3L6EHJ41e-158A0A3L6EHJ4_MAIZE; Ethylene-responsive transcription factor ERF034
STRINGGRMZM5G816314_P011e-159(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]