PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G813892_P01
Common NameLOC100383177, MYBR43
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 317aa    MW: 34358.3 Da    PI: 6.3155
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G813892_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-1393137347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ +++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  GRMZM5G813892_P01  93 PWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 137
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.105.7E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.19986142IPR017930Myb domain
SuperFamilySSF466892.77E-1788143IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1989141IPR006447Myb domain, plants
SMARTSM007171.0E-1090140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-1190136IPR009057Homeodomain-like
CDDcd001675.61E-993138No hitNo description
PfamPF002494.8E-1193137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTRRCSHCSH NGHNSRTCPN RGVKIFGVRL TDGSAIRKSA SMGNLSLLSA GSTSGGASPA  60
DGPDLADGGG GYASDDFVQG SSSASRERKK GVPWTEEEHR RFLLGLQKLG KGDWRGISRN  120
FVVSRTPTQV ASHAQKYFIR QSNMSRRKRR SSLFDMVPDE SMDLPPLPGS QEPETSVLNQ  180
PPLPPPVEEE EEVESMESDT SAVAESSAAS ALMPESLQPT YPMIVPAYFS PFLQFSVPFW  240
PNQEDGGDLP QETHEIVKPV AVHSKNPINV DELVSMSKLS IGEPGQETVS TSLSLNLLVG  300
QNRQSAFHAN PQTRAQA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1006350.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G813892
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G813892_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275340.0KJ727534.1 Zea mays clone pUT5394 MYB-related transcription factor (MYBR43) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169313.10.0uncharacterized protein LOC100383177
SwissprotQ7XC570.0MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A317YKV30.0A0A317YKV3_MAIZE; Transcription factor MYBS3
TrEMBLC0PDV30.0C0PDV3_MAIZE; MYB-related transcription factor
STRINGGRMZM5G813892_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.15e-76MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]