PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G813651_P02
Common NameLOC100191716, NAC95
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 370aa    MW: 38847.1 Da    PI: 9.9779
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G813651_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.12.6e-3088353128
                NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+++++ +++ +glkktLvfy+g+apkg++++W+m+eyrl
  GRMZM5G813651_P02   8 IGEKEWYFYVPRDRKYRNGDRPNRVTASGYWKATGADRTIKADNSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 83 
                        4789**********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.9431104IPR003441NAC domain
SuperFamilySSF1019419.29E-355103IPR003441NAC domain
PfamPF023658.0E-131283IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MRAAMAAIGE KEWYFYVPRD RKYRNGDRPN RVTASGYWKA TGADRTIKAD NSRPIGLKKT  60
LVFYSGKAPK GVRSSWIMNE YRLPPDDTDR YHKTEISLCR VYKRTGIDDG GHGHPASARS  120
TPSRGVVTAP QQDNKQQASS SSTPTPPTTP SKMMQFLHGE CTSSQPAAIC RNSHHAAAAA  180
HSNNKAAAAG AQRQSQLLPT KPYCSGYQQL STASSAGSAV GAAVDHHHHQ QQQQQAGTGA  240
AAVSTSSSSS RNASYALAAA STYSLLSLVN AASMGGSGSA AAIDELSTLV GHVHGAPPYF  300
NHQAAAAGGH GHGHGFVLPL PTTPSSQQPM AALGTLPLSL AAISDKIWDW NPVGPDATAR  360
DYGSATGGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-33610466165NO APICAL MERISTEM PROTEIN
1ut4_B9e-33610466165NO APICAL MERISTEM PROTEIN
1ut7_A9e-33610466165NO APICAL MERISTEM PROTEIN
1ut7_B9e-33610466165NO APICAL MERISTEM PROTEIN
4dul_A9e-33610466165NAC domain-containing protein 19
4dul_B9e-33610466165NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G813651
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G813651_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0339020.0BT033902.1 Zea mays full-length cDNA clone ZM_BFc0061J19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315134.10.0uncharacterized protein LOC100191716
TrEMBLB4F9W40.0B4F9W4_MAIZE; NAC transcription factor
STRINGGRMZM5G813651_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.26e-62NAC domain containing protein 35
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]