PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G813651_P01
Common NameLOC100191716
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 447aa    MW: 47279.3 Da    PI: 9.1307
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G813651_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.82.5e-50351602128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d++++
  GRMZM5G813651_P01  35 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTASGYWKATGADRTIK 125
                        79***************************.89***************888889*************************************** PP

                NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + +++ +glkktLvfy+g+apkg++++W+m+eyrl
  GRMZM5G813651_P01 126 ADNSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 160
                        *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5634180IPR003441NAC domain
PROSITE profilePS5100555.9334181IPR003441NAC domain
PfamPF023655.5E-2536160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSGGGGGRHE NGHGGAAAAG GSGGSSDAHE DDLVMPGFRF HPTEEELIEF YLRRKVEGKR  60
FNVELITFLD LYRYDPWELP AMAAIGEKEW YFYVPRDRKY RNGDRPNRVT ASGYWKATGA  120
DRTIKADNSR PIGLKKTLVF YSGKAPKGVR SSWIMNEYRL PPDDTDRYHK TEISLCRVYK  180
RTGIDDGGHG HPASARSTPS RGVVTAPQQD NKQQASSSST PTPPTTPSKM MQFLHGECTS  240
SQPAAICRNS HHAAAAAHSN NKAAAAGAQR QSQLLPTKPY CSGYQQLSTA SSAGSAVGAA  300
VDHHHHQQQQ QQAGTGAAAV STSSSSSRNA SYALAAASTY SLLSLVNAAS MGGSGSAAAI  360
DELSTLVGHV HGAPPYFNHQ AAAAGGHGHG HGFVLPLPTT PSSQQPMAAL GTLPLSLAAI  420
SDKIWDWNPV GPDATARDYG SATGGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-533618119165NO APICAL MERISTEM PROTEIN
1ut4_B2e-533618119165NO APICAL MERISTEM PROTEIN
1ut7_A2e-533618119165NO APICAL MERISTEM PROTEIN
1ut7_B2e-533618119165NO APICAL MERISTEM PROTEIN
4dul_A2e-533618119165NAC domain-containing protein 19
4dul_B2e-533618119165NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G813651
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G813651_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0398640.0BT039864.1 Zea mays full-length cDNA clone ZM_BFc0047I12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315134.10.0uncharacterized protein LOC100191716
TrEMBLB4FRX60.0B4FRX6_MAIZE; NAC domain-containing protein 35
STRINGGRMZM5G813651_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-100NAC domain containing protein 35
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]