PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G812272_P02 | ||||||||
Common Name | LOC100279449, ZEAMMB73_267137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 414aa MW: 43413.5 Da PI: 6.5533 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.7 | 1.2e-33 | 199 | 256 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers++dp vv++tYeg+H+h+ GRMZM5G812272_P02 199 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQRCPVKKRVERSHQDPAVVITTYEGKHTHP 256 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-35 | 183 | 258 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-29 | 190 | 258 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.65 | 193 | 258 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-39 | 198 | 257 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-27 | 199 | 256 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MSSGDFHYHD ELAALFAQRP APAGEMTMAL QQQAPAASWF ADYLHAGAPG MGMDMDYDLL 60 CRALDLPVPG DEDGVVKREL LLVADTGGGG GGFAAPLTPN TTSSMSSSSS EAAGAAAGGG 120 GGGSFGAAEE ESQSLGRCKK EDDGDGEESK DKEAMKGEED DADTGKKGSA AGKGKGKGEK 180 RQRQPRIAFM TKSEVDHLED GYRWRKYGQK AVKNSPYPRS YYRCTTQRCP VKKRVERSHQ 240 DPAVVITTYE GKHTHPIPST LRGSSTHLLA AQLHHHHHHN IVGAFPPPPP PPQTMCLPFV 300 GRTGDGGGVI DMLGLCLPPR NHAAVPPAAT GLAPSPCCMS GPVGTVAGAT TTTAPTTTTV 360 TTTTTSSPPP PPSLQTMQHF MAQDDFGLLQ DMLPSSSSSL SFVVHSNGSN VQLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-27 | 189 | 259 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-27 | 189 | 259 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G812272 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G812272_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054254 | 0.0 | BT054254.1 Zea mays full-length cDNA clone ZM_BFb0200C23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001341332.1 | 0.0 | uncharacterized protein LOC100279449 | ||||
TrEMBL | A0A3L6DM97 | 0.0 | A0A3L6DM97_MAIZE; Putative WRKY transcription factor 28 | ||||
TrEMBL | K7V474 | 0.0 | K7V474_MAIZE; Putative WRKY transcription factor 71 | ||||
STRING | GRMZM5G812272_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 6e-49 | WRKY DNA-binding protein 71 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G812272_P02 |