PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G812272_P02
Common NameLOC100279449, ZEAMMB73_267137
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 414aa    MW: 43413.5 Da    PI: 6.5533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G812272_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33199256259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers++dp vv++tYeg+H+h+
  GRMZM5G812272_P02 199 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQRCPVKKRVERSHQDPAVVITTYEGKHTHP 256
                        8********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-35183258IPR003657WRKY domain
SuperFamilySSF1182901.03E-29190258IPR003657WRKY domain
PROSITE profilePS5081132.65193258IPR003657WRKY domain
SMARTSM007744.5E-39198257IPR003657WRKY domain
PfamPF031065.1E-27199256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSSGDFHYHD ELAALFAQRP APAGEMTMAL QQQAPAASWF ADYLHAGAPG MGMDMDYDLL  60
CRALDLPVPG DEDGVVKREL LLVADTGGGG GGFAAPLTPN TTSSMSSSSS EAAGAAAGGG  120
GGGSFGAAEE ESQSLGRCKK EDDGDGEESK DKEAMKGEED DADTGKKGSA AGKGKGKGEK  180
RQRQPRIAFM TKSEVDHLED GYRWRKYGQK AVKNSPYPRS YYRCTTQRCP VKKRVERSHQ  240
DPAVVITTYE GKHTHPIPST LRGSSTHLLA AQLHHHHHHN IVGAFPPPPP PPQTMCLPFV  300
GRTGDGGGVI DMLGLCLPPR NHAAVPPAAT GLAPSPCCMS GPVGTVAGAT TTTAPTTTTV  360
TTTTTSSPPP PPSLQTMQHF MAQDDFGLLQ DMLPSSSSSL SFVVHSNGSN VQLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27189259878Probable WRKY transcription factor 4
2lex_A4e-27189259878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G812272
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G812272_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542540.0BT054254.1 Zea mays full-length cDNA clone ZM_BFb0200C23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341332.10.0uncharacterized protein LOC100279449
TrEMBLA0A3L6DM970.0A0A3L6DM97_MAIZE; Putative WRKY transcription factor 28
TrEMBLK7V4740.0K7V474_MAIZE; Putative WRKY transcription factor 71
STRINGGRMZM5G812272_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.16e-49WRKY DNA-binding protein 71