PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G809663_P01 | ||||||||
Common Name | CADR9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YB | ||||||||
Protein Properties | Length: 105aa MW: 11914.5 Da PI: 4.9234 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 105 | 5.2e-33 | 13 | 92 | 2 | 93 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +eqdrflP+an++rim++++ +n+ki++da+e++q easdkc +e+rktin dd++w+l+tlGfe+yveplk+yl++yre GRMZM5G809663_P01 13 KEQDRFLPVANIGRIMRRAVLENGKIARDARESIQ------------EASDKCVKERRKTINDDDIIWSLGTLGFEEYVEPLKIYLNNYREQ 92 89*******************************98............69*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.0E-28 | 11 | 92 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.0E-24 | 15 | 92 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.6E-10 | 18 | 69 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.7E-8 | 53 | 71 | No hit | No description |
PRINTS | PR00615 | 1.7E-8 | 72 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MSEVEANAGG GGKEQDRFLP VANIGRIMRR AVLENGKIAR DARESIQEAS DKCVKERRKT 60 INDDDIIWSL GTLGFEEYVE PLKIYLNNYR EQYGYLLSIA VQYGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 6e-29 | 13 | 91 | 3 | 93 | NF-YB |
4awl_B | 6e-29 | 13 | 91 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 6e-29 | 13 | 91 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G809663 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14617083}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G809663_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020400222.1 | 6e-54 | nuclear transcription factor Y subunit B-4 | ||||
Swissprot | Q65XK1 | 7e-41 | NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4 | ||||
TrEMBL | A0A3L6DT26 | 2e-54 | A0A3L6DT26_MAIZE; Nuclear transcription factor Y subunit B-4 | ||||
STRING | GRMZM5G809663_P01 | 4e-71 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 | Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.6 | 3e-37 | nuclear factor Y, subunit B1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G809663_P01 |
Entrez Gene | 103637749 |
Publications ? help Back to Top | |||
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