PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G808366_P01
Common NameARF5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 513aa    MW: 55449.9 Da    PI: 6.4025
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G808366_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.3e-24117218199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +a+++        +++ +  +l ++d++g+ W++++iyr++++r++lt+GW++Fv+a+ L +gD+vvF+  
  GRMZM5G808366_P01 117 FTKELTQSDANNGGGFSVPRYCADHIfptldfdANPPVQ--KLFMRDTRGNPWQFRHIYRGTPRRHLLTTGWSRFVNAKLLVAGDIVVFM-- 204
                        89******************999777*****95444444..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        +r+++ l v+++r+
  GRMZM5G808366_P01 205 RRHNGDLIVGLRRT 218
                        5578888***9997 PP

2Auxin_resp44.66.4e-16256326169
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsdl 69 
                        aa+ a+++  F v+Y Pr+++ eF+v++++ve  l +++ +G +++m+ +e ed +++ +  G v ++++ 
  GRMZM5G808366_P01 256 AARLAAEGRSFAVTYFPRQAAGEFIVPRDEVEGVLATRWEPGAQVRMQvMEAEDTRRTVWaDGHVKSLHQN 326
                        6788999****************************************858**********99***999983 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.03E-28111218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-35115219IPR015300DNA-binding pseudobarrel domain
CDDcd100173.92E-21116217No hitNo description
SMARTSM010192.0E-18117219IPR003340B3 DNA binding domain
PfamPF023625.3E-22117218IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197117219IPR003340B3 DNA binding domain
PfamPF065078.4E-11256336IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MGPQPPLHLP AANGDSIVDR DVWLACAVPL SRLPAVGAEV YYFPHGHAEQ CPAHLPAPLP  60
APHLFPCTVA GVSLGADDET NEVFAKISLS PGPHRGPAAA CRTDPTSDCP PQELSYFTKE  120
LTQSDANNGG GFSVPRYCAD HIFPTLDFDA NPPVQKLFMR DTRGNPWQFR HIYRGTPRRH  180
LLTTGWSRFV NAKLLVAGDI VVFMRRHNGD LIVGLRRTPR YPLVFPRVGS GAGVDPDQPP  240
PRNARARVPP QDVIEAARLA AEGRSFAVTY FPRQAAGEFI VPRDEVEGVL ATRWEPGAQV  300
RMQVMEAEDT RRTVWADGHV KSLHQNIWRA LEIDWDDSSP LSPNLSRFVN AWQVELVTHP  360
PLPNGARICN PIASLCHGDV SYPLIGSEIQ GPPIPASMQG ARHTGPCAAP SESSAVLTNR  420
VLFPLLNPDL QMPPFTSPSD SSEILDPESA SPPNKSVRLP PAELPVQVKS IQLFGATIMV  480
HVVRSVACGG CCEELNGAPS GDATADGSVG KDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-532035521353Auxin response factor 1
4ldy_B2e-532035521353Auxin response factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G808366
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G808366_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0673270.0BT067327.1 Zea mays full-length cDNA clone ZM_BFc0012D17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169598.10.0uncharacterized protein LOC100383479
SwissprotQ7XSS91e-137ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A3L6FPW50.0A0A3L6FPW5_MAIZE; Auxin response factor
TrEMBLC0PGA80.0C0PGA8_MAIZE; Auxin response factor
TrEMBLK0DCT20.0K0DCT2_MAIZE; Auxin response factor (Fragment)
STRINGGRMZM5G808366_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Representative plantOGRP1320045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-89auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]