PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G806839_P01
Common NameLOC103637641
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 266aa    MW: 27690.8 Da    PI: 4.8111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G806839_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1882131255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa+++++g
  GRMZM5G806839_P01  82 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAALAIKG 131
                        69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-2182140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-3182140IPR001471AP2/ERF domain
PfamPF008478.1E-1382131IPR001471AP2/ERF domain
PROSITE profilePS5103223.16982139IPR001471AP2/ERF domain
SMARTSM003803.2E-3582145IPR001471AP2/ERF domain
PRINTSPR003671.3E-108394IPR001471AP2/ERF domain
CDDcd000181.09E-1883141No hitNo description
PRINTSPR003671.3E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAQELQETSS SSATTTTSSC TTSCCSSTVT DSSSSPPSPA AANAAPAPRK AEAETGGDED  60
GCAGKAAPAK KRERSSEGKH PTYRGVRMRA WGKWVSEIRE PRKKSRIWLG TFPTAEMAAR  120
AHDAAALAIK GRATQLNFPV LAGVLPRAAS AAPKDVQAAA MLAAAFTSPS SAPSELDAGA  180
PAPREVPATK NGSPSEDEAG AEAPVPPAAA SQPGTPSSGV DEERQLFDLP DLLLDVRDGF  240
GRFPPMWAPF HDVLEVNAEE EPLLWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17801391272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.94181e-130endosperm| glume| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G806839
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G806839_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3147031e-148KF314703.1 Setaria italica clone SiDREB hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658263.10.0ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ79e-48ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1D6K8A30.0A0A1D6K8A3_MAIZE; Ethylene-responsive transcription factor ERF035
STRINGGRMZM5G806839_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]