PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G805505_P01 | ||||||||
Common Name | LOC100272603 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 315aa MW: 33823 Da PI: 5.0192 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.8e-19 | 137 | 188 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g r +lg+++t+ eAa+a+++a+ +++g+ GRMZM5G805505_P01 137 KYRGVRQRP-WGKYAAEIRDPKRRG--SRAWLGTYDTPVEAARAYDRAAFRMRGA 188 8********.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 136 | 196 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-35 | 137 | 201 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.55E-30 | 137 | 196 | No hit | No description |
SuperFamily | SSF54171 | 2.81E-22 | 137 | 196 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.868 | 137 | 195 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-13 | 137 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-13 | 138 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-13 | 177 | 197 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDMDFNGDAD SFALDFIRDL MLGGDSSIPV PSPVAASSDD VTCPVLPPQL EFQSVSFLPH 60 QQRQGYIDLT TSECVGAAPA AATVVGEAVF RAQEPAPPVM IKFGTEPSSP LATTRQPLTI 120 SVPPSSYAWA AVEDYRKYRG VRQRPWGKYA AEIRDPKRRG SRAWLGTYDT PVEAARAYDR 180 AAFRMRGAKA ILNFPNEVGT RGADLWAAPT ANKRKRQQMV EGEDDPEPEV EVVPMVNKAV 240 KTEAQSSMTT QASSPSPSST VASTTTGTTG GAGWLPVTPS SGSSEQYWET LLRGLPPLSP 300 LSPHPALGFP LLSVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-25 | 134 | 197 | 11 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G805505 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G805505_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039037 | 0.0 | BT039037.1 Zea mays full-length cDNA clone ZM_BFb0357J21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140538.1 | 0.0 | uncharacterized protein LOC100272603 | ||||
TrEMBL | B4FPJ9 | 0.0 | B4FPJ9_MAIZE; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | K4JFF8 | 0.0 | K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment) | ||||
STRING | GRMZM5G805505_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 5e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G805505_P01 |
Entrez Gene | 100272603 |