PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G805505_P01
Common NameLOC100272603
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 315aa    MW: 33823 Da    PI: 5.0192
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G805505_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-19137188256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        +y+GVr+++ +g+++AeIrdp+ +g   r +lg+++t+ eAa+a+++a+ +++g+
  GRMZM5G805505_P01 137 KYRGVRQRP-WGKYAAEIRDPKRRG--SRAWLGTYDTPVEAARAYDRAAFRMRGA 188
                        8********.**********96554..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-31136196IPR001471AP2/ERF domain
SMARTSM003802.0E-35137201IPR001471AP2/ERF domain
CDDcd000187.55E-30137196No hitNo description
SuperFamilySSF541712.81E-22137196IPR016177DNA-binding domain
PROSITE profilePS5103223.868137195IPR001471AP2/ERF domain
PfamPF008473.7E-13137187IPR001471AP2/ERF domain
PRINTSPR003671.6E-13138149IPR001471AP2/ERF domain
PRINTSPR003671.6E-13177197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDMDFNGDAD SFALDFIRDL MLGGDSSIPV PSPVAASSDD VTCPVLPPQL EFQSVSFLPH  60
QQRQGYIDLT TSECVGAAPA AATVVGEAVF RAQEPAPPVM IKFGTEPSSP LATTRQPLTI  120
SVPPSSYAWA AVEDYRKYRG VRQRPWGKYA AEIRDPKRRG SRAWLGTYDT PVEAARAYDR  180
AAFRMRGAKA ILNFPNEVGT RGADLWAAPT ANKRKRQQMV EGEDDPEPEV EVVPMVNKAV  240
KTEAQSSMTT QASSPSPSST VASTTTGTTG GAGWLPVTPS SGSSEQYWET LLRGLPPLSP  300
LSPHPALGFP LLSVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-251341971174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G805505
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G805505_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0390370.0BT039037.1 Zea mays full-length cDNA clone ZM_BFb0357J21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140538.10.0uncharacterized protein LOC100272603
TrEMBLB4FPJ90.0B4FPJ9_MAIZE; Ethylene-responsive transcription factor ERF105
TrEMBLK4JFF80.0K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM5G805505_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.15e-33ERF family protein