PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G805387_P02 | ||||||||
Common Name | ZEAMMB73_279785 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 152aa MW: 17256.9 Da PI: 10.3631 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.7 | 2.7e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRr+g+ KKA E+ vLCd+ev v+ifss gkly+y+s GRMZM5G805387_P02 9 KRIENSTNRQVTFSKRRAGLVKKAREIGVLCDTEVGVVIFSSGGKLYDYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 64.4 | 4.1e-22 | 71 | 143 | 1 | 73 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 yq++sgk l+ +k+++l+ e++++kke++n+q ++Rhl+GedL+sL+++eL +e+ L+++ ++ R+k+ +l GRMZM5G805387_P02 71 YQTNSGKILWGEKHKNLSAEIDRVKKENDNMQIQLRHLKGEDLNSLQHRELIAIEEGLQNGQTNMREKQAVIL 143 89999999************************************************************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.258 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-32 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.21E-40 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 3.2E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-13 | 83 | 143 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.68 | 84 | 152 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MGRGKIKIKR IENSTNRQVT FSKRRAGLVK KAREIGVLCD TEVGVVIFSS GGKLYDYCSP 60 RTSLSRILEK YQTNSGKILW GEKHKNLSAE IDRVKKENDN MQIQLRHLKG EDLNSLQHRE 120 LIAIEEGLQN GQTNMREKQA VILTLPVAPE LI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-20 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.336 | 0.0 | ear| endosperm| ovary| pedicel| pericarp| pollen| shoot| silk |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G805387 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in lodicules and stamens from early to late stage of flower development. {ECO:0000269|PubMed:10945340, ECO:0000269|Ref.1}. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in anthers and carpels. Expressed in pollen, tapetum and stigma. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G805387_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087013 | 0.0 | BT087013.1 Zea mays full-length cDNA clone ZM_BFb0323J02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656271.1 | 4e-98 | MADS-box transcription factor 4-like isoform X1 | ||||
Swissprot | Q40702 | 1e-81 | MADS2_ORYSJ; MADS-box transcription factor 2 | ||||
TrEMBL | C4J866 | 1e-107 | C4J866_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM5G805387_P03 | 2e-96 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 4e-60 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G805387_P02 |
Publications ? help Back to Top | |||
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