PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G805026_P02
Common NameLOC103636556, ZEAMMB73_658455, Zm.72512
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WOX
Protein Properties Length: 308aa    MW: 33939.2 Da    PI: 7.291
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G805026_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.34.1e-21119179257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        r+R+++t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  GRMZM5G805026_P02 119 RQRWQPTPMQLQILESIFDQgNGTPSKQKIKEITAELsqhgQISETNVYNWFQNRRARSKR 179
                        89*****************99**************************************97 PP

2Wus_type_Homeobox1024.2e-33118181265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RW Ptp Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
  GRMZM5G805026_P02 118 ARQRWQPTPMQLQILESIFDQGNGTPSKQKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQ 181
                        789***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-17114184IPR009057Homeodomain-like
PROSITE profilePS5007114.868115180IPR001356Homeobox domain
SMARTSM003895.4E-14117184IPR001356Homeobox domain
SuperFamilySSF466891.33E-18118186IPR009057Homeodomain-like
PfamPF000466.1E-19119179IPR001356Homeobox domain
CDDcd000861.00E-13119181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDWGNRTKAA AAAAAPDERA GGGEGLGGYV KVMTDEQMEV LRKQISIYAT ICEQLVEMHR  60
VLTEHQDTIA GFIHRCCLLV FCSNYVVSLL HLVKSEGLRF SNLYCDPLII PGGHKITARQ  120
RWQPTPMQLQ ILESIFDQGN GTPSKQKIKE ITAELSQHGQ ISETNVYNWF QNRRARSKRK  180
QAAASLPNNA ESEAEADEEP LADKKPKSDR PPPPPPPIQD NTKATGALSA DRVSGGTRHL  240
DTGHDQTSGV MYGCNDSGLL RSSGSSGQMS LYENFMSNPR IDRFPAKVES SRSFPHLQQH  300
GEGFGMFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172180RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.725120.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G805026
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G805026_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0385410.0BT038541.1 Zea mays full-length cDNA clone ZM_BFb0284I23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657129.10.0WUSCHEL-related homeobox 8-like isoform X1
SwissprotQ5QMM31e-103WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLB4FN530.0B4FN53_MAIZE; Uncharacterized protein
STRINGGRMZM5G805026_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Representative plantOGRP18731639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.18e-54WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nardmann J,Werr W
    The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution.
    Mol. Biol. Evol., 2006. 23(12): p. 2492-504
    [PMID:16987950]
  3. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]