PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G805026_P02 | ||||||||
Common Name | LOC103636556, ZEAMMB73_658455, Zm.72512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WOX | ||||||||
Protein Properties | Length: 308aa MW: 33939.2 Da PI: 7.291 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.3 | 4.1e-21 | 119 | 179 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ GRMZM5G805026_P02 119 RQRWQPTPMQLQILESIFDQgNGTPSKQKIKEITAELsqhgQISETNVYNWFQNRRARSKR 179 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 102 | 4.2e-33 | 118 | 181 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq GRMZM5G805026_P02 118 ARQRWQPTPMQLQILESIFDQGNGTPSKQKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQ 181 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 114 | 184 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.868 | 115 | 180 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-14 | 117 | 184 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.33E-18 | 118 | 186 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.1E-19 | 119 | 179 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.00E-13 | 119 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MDWGNRTKAA AAAAAPDERA GGGEGLGGYV KVMTDEQMEV LRKQISIYAT ICEQLVEMHR 60 VLTEHQDTIA GFIHRCCLLV FCSNYVVSLL HLVKSEGLRF SNLYCDPLII PGGHKITARQ 120 RWQPTPMQLQ ILESIFDQGN GTPSKQKIKE ITAELSQHGQ ISETNVYNWF QNRRARSKRK 180 QAAASLPNNA ESEAEADEEP LADKKPKSDR PPPPPPPIQD NTKATGALSA DRVSGGTRHL 240 DTGHDQTSGV MYGCNDSGLL RSSGSSGQMS LYENFMSNPR IDRFPAKVES SRSFPHLQQH 300 GEGFGMFG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 180 | RRARSKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.72512 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G805026 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G805026_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038541 | 0.0 | BT038541.1 Zea mays full-length cDNA clone ZM_BFb0284I23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657129.1 | 0.0 | WUSCHEL-related homeobox 8-like isoform X1 | ||||
Swissprot | Q5QMM3 | 1e-103 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | B4FN53 | 0.0 | B4FN53_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM5G805026_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 | Representative plant | OGRP1873 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 8e-54 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G805026_P02 |
Entrez Gene | 103636556 |
Publications ? help Back to Top | |||
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