PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G805026_P01 | ||||||||
Common Name | LOC103636556, ZEAMMB73_658455, Zm.72512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WOX | ||||||||
Protein Properties | Length: 282aa MW: 30976.6 Da PI: 6.9565 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.5 | 3.5e-21 | 93 | 153 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ GRMZM5G805026_P01 93 RQRWQPTPMQLQILESIFDQgNGTPSKQKIKEITAELsqhgQISETNVYNWFQNRRARSKR 153 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 102.2 | 3.6e-33 | 92 | 155 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq GRMZM5G805026_P01 92 ARQRWQPTPMQLQILESIFDQGNGTPSKQKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQ 155 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 88 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.868 | 89 | 154 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-14 | 91 | 158 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-18 | 92 | 160 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.3E-19 | 93 | 153 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.98E-13 | 93 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MDWGNRTKAA AAAAAPDERA GGGEGLGGYV KVMTDEQMEV LRKQISIYAT ICEQLVEMHR 60 VLTEHQDTIA GLRFSNLYCD PLIIPGGHKI TARQRWQPTP MQLQILESIF DQGNGTPSKQ 120 KIKEITAELS QHGQISETNV YNWFQNRRAR SKRKQAAASL PNNAESEAEA DEEPLADKKP 180 KSDRPPPPPP PIQDNTKATG ALSADRVSGG TRHLDTGHDQ TSGVMYGCND SGLLRSSGSS 240 GQMSLYENFM SNPRIDRFPA KVESSRSFPH LQQHGEGFGM FG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 154 | RRARSKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.72512 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G805026 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G805026_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036945 | 0.0 | BT036945.1 Zea mays full-length cDNA clone ZM_BFb0148G14 mRNA, complete cds. | |||
GenBank | EU952747 | 0.0 | EU952747.1 Zea mays clone 1287724 WUSCHEL-related homeobox 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288430.1 | 0.0 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 1e-110 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | B4FIK7 | 0.0 | B4FIK7_MAIZE; WUSCHEL-related homeobox 13 | ||||
TrEMBL | K4JE76 | 0.0 | K4JE76_MAIZE; HB-type transcription factor (Fragment) | ||||
STRING | GRMZM5G805026_P02 | 1e-170 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-58 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G805026_P01 |
Entrez Gene | 103636556 |
Publications ? help Back to Top | |||
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