PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G805026_P01
Common NameLOC103636556, ZEAMMB73_658455, Zm.72512
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WOX
Protein Properties Length: 282aa    MW: 30976.6 Da    PI: 6.9565
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G805026_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.5e-2193153257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        r+R+++t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  GRMZM5G805026_P01  93 RQRWQPTPMQLQILESIFDQgNGTPSKQKIKEITAELsqhgQISETNVYNWFQNRRARSKR 153
                        89*****************99**************************************97 PP

2Wus_type_Homeobox102.23.6e-3392155265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RW Ptp Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
  GRMZM5G805026_P01  92 ARQRWQPTPMQLQILESIFDQGNGTPSKQKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQ 155
                        789***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-1788158IPR009057Homeodomain-like
PROSITE profilePS5007114.86889154IPR001356Homeobox domain
SMARTSM003895.4E-1491158IPR001356Homeobox domain
SuperFamilySSF466891.11E-1892160IPR009057Homeodomain-like
PfamPF000465.3E-1993153IPR001356Homeobox domain
CDDcd000861.98E-1393155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDWGNRTKAA AAAAAPDERA GGGEGLGGYV KVMTDEQMEV LRKQISIYAT ICEQLVEMHR  60
VLTEHQDTIA GLRFSNLYCD PLIIPGGHKI TARQRWQPTP MQLQILESIF DQGNGTPSKQ  120
KIKEITAELS QHGQISETNV YNWFQNRRAR SKRKQAAASL PNNAESEAEA DEEPLADKKP  180
KSDRPPPPPP PIQDNTKATG ALSADRVSGG TRHLDTGHDQ TSGVMYGCND SGLLRSSGSS  240
GQMSLYENFM SNPRIDRFPA KVESSRSFPH LQQHGEGFGM FG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146154RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.725120.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G805026
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G805026_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369450.0BT036945.1 Zea mays full-length cDNA clone ZM_BFb0148G14 mRNA, complete cds.
GenBankEU9527470.0EU952747.1 Zea mays clone 1287724 WUSCHEL-related homeobox 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288430.10.0WUSCHEL-related homeobox 8-like
SwissprotQ5QMM31e-110WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLB4FIK70.0B4FIK7_MAIZE; WUSCHEL-related homeobox 13
TrEMBLK4JE760.0K4JE76_MAIZE; HB-type transcription factor (Fragment)
STRINGGRMZM5G805026_P021e-170(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-58WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nardmann J,Werr W
    The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution.
    Mol. Biol. Evol., 2006. 23(12): p. 2492-504
    [PMID:16987950]
  3. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]