PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G803308_P01
Common NameLOC100304070, MYB112, ZEAMMB73_640604
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 304aa    MW: 32629.4 Da    PI: 7.475
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G803308_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.3e-191156147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg+W++eEd+ l ++v+++G ++W++I r+++ gR++k+c++rw + 
  GRMZM5G803308_P01 11 RGPWSPEEDDALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 56
                       89******************************.***********985 PP
2Myb_DNA-binding55.21.7e-1763105145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        r ++T+eEd  +v+a+++lG++ W++Iar ++ gRt++ +k++w+
  GRMZM5G803308_P01  63 RRPFTAEEDAAIVRAHARLGNR-WAAIARLLP-GRTDNAVKNHWN 105
                        679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.274661IPR017930Myb domain
SuperFamilySSF466893.44E-318104IPR009057Homeodomain-like
SMARTSM007175.3E-171059IPR001005SANT/Myb domain
PfamPF002491.4E-181156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-251264IPR009057Homeodomain-like
CDDcd001676.65E-161355No hitNo description
SMARTSM007175.3E-1662110IPR001005SANT/Myb domain
PfamPF002498.5E-1563105IPR001005SANT/Myb domain
PROSITE profilePS5129420.28663112IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2365112IPR009057Homeodomain-like
CDDcd001672.63E-1265105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGSEADCDRI RGPWSPEEDD ALRRLVERHG ARNWTAIGRE IPGRSGKSCR LRWCNQLSPQ  60
VERRPFTAEE DAAIVRAHAR LGNRWAAIAR LLPGRTDNAV KNHWNCSLKR KLAAASAPAG  120
SSDVEARPTK RVSLSPDSPS GSGSGSGSGS GSGSGSDRSD LSHGAGQVYR PVARSGGFEP  180
ADCAMSRPLE EEEEEKEDPL TSLSLSLPGT DQRFHHDRAH SQFQELPASP PSPSPPPPPV  240
LSAYPFSPVF MEAMQELIRT EVQRYMASVG VRAGCGAAGG ADLCMPQLVD GVMRAAAERV  300
GRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-3981124108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1384280.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G803308
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G803308_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9694730.0EU969473.1 Zea mays clone 330765 MYB transcription factor TaMYB1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159044.10.0uncharacterized protein LOC100304070
TrEMBLB6TWV80.0B6TWV8_MAIZE; MYB transcription factor
STRINGGRMZM5G803308_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.15e-58myb domain protein r1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]