PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G703514_P03 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 501aa MW: 54539 Da PI: 10.704 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.7 | 2.2e-11 | 35 | 84 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GV +++ rgr+vA+ +d ++ + +l +f+taeeA ++++ ++l+g GRMZM2G703514_P03 35 PRYRGVLRRR-RGRYVARTYD---RK-GNQMWLCTFDTAEEASRRYDSETRRLHG 84 68****8666.8******666...32.59******************99888887 PP | |||||||
2 | AP2 | 39.6 | 1.3e-12 | 206 | 255 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGV +++ rgr++++ +d ++ kr +l +f+taeeAa++++ ++l+g GRMZM2G703514_P03 206 PRYKGVLRRR-RGRYAVRTCD---RK-GKRMWLSTFDTAEEAARRYDSETRRLRG 255 68****8666.8****99444...32.5*******************98888887 PP | |||||||
3 | AP2 | 36.4 | 1.3e-11 | 377 | 426 | 1 | 55 |
AP2 1 sgykGV.rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+G rw+ rgr+ A+ rd + kr +lg+f+t eeAa++++ ++l+g GRMZM2G703514_P03 377 PRYRGMlRWR--RGRYIARTRDR-----KgKRMWLGTFDTTEEAARRYDSETRRLRG 426 6899999996..5******9993.....34*******************99888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-6 | 35 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.147 | 36 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-17 | 36 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-17 | 36 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-13 | 36 | 93 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.28E-12 | 206 | 265 | No hit | No description |
Pfam | PF00847 | 1.5E-8 | 206 | 248 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-18 | 207 | 264 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.937 | 207 | 263 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-17 | 207 | 269 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-13 | 207 | 264 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.6E-5 | 208 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-5 | 229 | 245 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.71E-16 | 377 | 435 | No hit | No description |
Pfam | PF00847 | 4.0E-6 | 377 | 419 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.728 | 378 | 434 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-18 | 378 | 435 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-14 | 378 | 435 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.0E-16 | 378 | 440 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MEEHRPRCNA TAPSGRIAGG GKRKVAAVAG APAEPRYRGV LRRRRGRYVA RTYDRKGNQM 60 WLCTFDTAEE ASRRYDSETR RLHGSSAITN FPATSDNRVP LLAPSLHAVD EHSFAADESQ 120 PVVESSVSTT PPPKPVDATA ETLSTFSSSD EADAGGGAEA AAGPRKFVME IHMEEHHPRC 180 NATVPTGRVA GGSKRKAAAA GASAEPRYKG VLRRRRGRYA VRTCDRKGKR MWLSTFDTAE 240 EAARRYDSET RRLRGSSAIT NFPATSDDRV SLPAPSLHAV DKHSFAADES QPVVGSPVST 300 TPLPKHVDAA AETLSMFSSS DEADAGGGAE AAAGPRKFVM EIHMEEHRPR CNATVPTGRV 360 AGGGKRKAAA ASASAEPRYR GMLRWRRGRY IARTRDRKGK RMWLGTFDTT EEAARRYDSE 420 TRRLRGPSAI TNFPAMSDDR VPLPTPLLHA VDEHSFAPDE SQPVVGSPVS TTPPPKPVDA 480 VAETRGRRRR NPLHVLLQRR G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 215 | KRKAAAAGASAEPRYKGVLRRRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G703514 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G703514_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727713 | 0.0 | KJ727713.1 Zea mays clone pUT5652 AP2-EREBP transcription factor (EREB123) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020396639.1 | 1e-137 | AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
TrEMBL | A0A1D6JRM7 | 0.0 | A0A1D6JRM7_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G703514_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-11 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G703514_P03 |