PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G703281_P01
Common NameLOC100502517
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 298aa    MW: 31368.6 Da    PI: 9.8153
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G703281_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-0594116123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C + F+++  L  H++ H
  GRMZM2G703281_P01  94 FECHYCRRNFPTSQALGGHQNAH 116
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.03E-690122No hitNo description
PROSITE profilePS5015711.32394121IPR007087Zinc finger, C2H2
PfamPF139121.1E-594118IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSEQDGQHVA ASTPDTAIES FSQLPFVRPK PPQPASTSSA SSIRLFGFKV PPDAAATSSS  60
TGTSDATAAS ATVAGQAAVS GAGAGDGGGG GRKFECHYCR RNFPTSQALG GHQNAHKRER  120
QHAKRAQCQS AMAMHHAHHY PDHTHAYPAF TSYHHQFGMA RYEPPPHYPS WSSHLPHAAP  180
PLVPRYYGGS GSLSQPINGS PVPAAALWRV PAAVSVAAPL VRQERPTPLS LCGHDEEALT  240
GARRGDISAD AGQGGSRSSS TSSSTSSRHQ PRRAGAAENR ENRLFMRTVA RAEALLST
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G703281
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G703281_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0884180.0BT088418.1 Zea mays full-length cDNA clone ZM_BFc0186D07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183924.10.0uncharacterized protein LOC100502517
TrEMBLC4JC710.0C4JC71_MAIZE; Uncharacterized protein
STRINGGRMZM2G703281_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8341720
Representative plantOGRP285958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.19e-22zinc finger protein 8