PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G702026_P01 | ||||||||
Common Name | Zm.4043 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARF | ||||||||
Protein Properties | Length: 677aa MW: 75129.4 Da PI: 6.303 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.4 | 2.7e-23 | 122 | 222 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++ +++aee+ ++++ + +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F GRMZM2G702026_P01 122 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmtQNPPWQ--ELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL-- 209 99**************************99975555545..8************************************************.. PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + +++el+v+v+r GRMZM2G702026_P01 210 RGENGELRVGVRR 222 449999*****97 PP | |||||||
2 | Auxin_resp | 105.9 | 4.6e-35 | 248 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdl...dpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a ++k+svGmRfkm+fe+++s+err+sGt++g+ ++ +++ W nS+WrsLk GRMZM2G702026_P01 248 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKNHKMSVGMRFKMRFEGDESPERRFSGTIIGMGCMpanSTSPWANSEWRSLK 333 789**************************************************************99874335679********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-43 | 113 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-40 | 118 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.76E-21 | 120 | 222 | No hit | No description |
SMART | SM01019 | 1.6E-21 | 122 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-21 | 122 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.462 | 122 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.9E-33 | 248 | 333 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.1E-6 | 531 | 581 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.201 | 545 | 627 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.62E-12 | 547 | 623 | No hit | No description |
Pfam | PF02309 | 5.3E-7 | 592 | 636 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MAEAGVARGS GSAGDALFRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ 60 HLPLFNLPHK ILCKVVNVEL RAETDSDEVY AQIMLQPQTE QSEPTSPDPE PPEPERCNIH 120 SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMTQNPPWQ ELVAKDLHGN EWHFRHIFRG 180 QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM 240 HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKNHKMSVGM RFKMRFEGDE 300 SPERRFSGTI IGMGCMPANS TSPWANSEWR SLKVQWDEPS AILRPDRVSP WEVEPLDRTN 360 PQPPQPPLRN KRARPPASPS IAPELAPVFG FWKSPAEPAQ AFSFSGLQRT QELYHSSPSS 420 MFSSSLNVGF NPKYEGPTPN TNHLYWTMRE TRTESYSASI NKAPTEKKQE STTSGCRLFG 480 IEIGSSAVSP VVTVASVGHD PPPPALSVDA ESDQLSQPSH ANKATDAPAA SSDRSPNETE 540 SRQARSCTKV IMQGVAVGRA VDLTRLDGYD DLRRKLEEMF DIPGELSASL KKWKVIYTDD 600 EDDMMLVGDD PWSEFCRMVK RIYIYSYEEA KSLTPKAKLP AIGGDTGVKP DPSKLPPESD 660 VPQSDSDNSA PVAADKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 11 | 357 | 13 | 356 | Auxin response factor 1 |
4ldw_A | 0.0 | 11 | 357 | 13 | 356 | Auxin response factor 1 |
4ldw_B | 0.0 | 11 | 357 | 13 | 356 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.4043 | 0.0 | ear| embryo| endosperm| leaf| meristem| ovary| pericarp| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G702026 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G702026_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065284 | 0.0 | BT065284.1 Zea mays full-length cDNA clone ZM_BFb0080F20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152338.1 | 0.0 | uncharacterized protein LOC100285977 | ||||
Swissprot | Q6YVY0 | 0.0 | ARFG_ORYSJ; Auxin response factor 7 | ||||
TrEMBL | A0A3L6ENT2 | 0.0 | A0A3L6ENT2_MAIZE; Auxin response factor | ||||
TrEMBL | C0PAG5 | 0.0 | C0PAG5_MAIZE; Auxin response factor | ||||
TrEMBL | K4JBW9 | 0.0 | K4JBW9_MAIZE; Auxin response factor (Fragment) | ||||
STRING | GRMZM2G702026_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1082 | 36 | 116 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G702026_P01 |
Publications ? help Back to Top | |||
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