PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G701218_P01
Common NameLOC103630521
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 414aa    MW: 46434.9 Da    PI: 7.0234
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G701218_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.29.2e-344498155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl
  GRMZM2G701218_P01 44 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 98
                       79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.38741101IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-324299IPR009057Homeodomain-like
SuperFamilySSF466898.6E-174399IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-234499IPR006447Myb domain, plants
PfamPF002497.8E-104697IPR001005SANT/Myb domain
PfamPF143792.8E-22145192IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MYHQHQGLSE LFTTRTSFPM EQHLFLRGGN AQGDSGLVLS TDAKPRLKWT PELHQRFVDA  60
VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQAQANVST SKNAIGCTSI  120
ADRIPGTSAA TMSSTNVVPQ AEKTIQIGEA LQMQIEVQRQ LNEQLEVQRH LQLRIEAQGK  180
YLQAVLEQAQ ETLGKQNLGP ANLEDAKIKI SQLVSQVSTE CFSNAITDVK GSSSVHRLEP  240
RQIQFVESST NSYLSVAEGF IKEQRLQHQQ HHGVLKAHDG SSLFCRKRPH EHETQFALNR  300
SLSERRMAHL QNDEQYSKAE FGYESDTEIV HEYTAPQNGG GSTTSSASGS KVDAEKLYLE  360
EQKCARQVAE YPRESKLIDF ENSCSGKKLD LNTHNVDDTD QAYRHFDLND FSWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G701218
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G701218_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649803.10.0myb-related protein 2
RefseqXP_008649804.10.0myb-related protein 2
TrEMBLA0A1D6M6Y90.0A0A1D6M6Y9_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G701218_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122793137
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.36e-96G2-like family protein