PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G701063_P01 | ||||||||
Common Name | Z576C20.4, Zm.13246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 29044.5 Da PI: 8.9488 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l+ +vk +G g W+ ++++ g++R++k+c++rw++yl GRMZM2G701063_P01 14 RGAWTAKEDDTLAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.7e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+v+++k+lG++ W++Ia +++ gRt++++k++w++ GRMZM2G701063_P01 67 RGNISYDEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111 788899****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.209 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.03E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-9 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 65 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.371 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.34E-10 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0090379 | Biological Process | secondary cell wall biogenesis involved in seed trichome differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGRRACCAKE GVKRGAWTAK EDDTLAAYVK AHGEGKWREV PQKAGLRRCG KSCRLRWLNY 60 LRPNIKRGNI SYDEEDLIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS TLGRRAGAGA 120 GAGGSRVVFA PDTGSHATPA AAGSREMTGG QKGAAPRADL GSPGSAAVVW APKAARCTGG 180 LFFHRRDTHT PHAGGTETPT PMMAGGAGGE ARSSDDCSSA ASVSVSPLVG SSQHDPCFSG 240 DGNGDWMDDV RALASFLESD EEWLRCHTAE QLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G701063 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G701063_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY135018 | 0.0 | AY135018.1 Zea mays PL transcription factor (pl) mRNA, pl-bol3 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008648335.1 | 1e-175 | PL transcription factor isoform X1 | ||||
Swissprot | P10290 | 1e-116 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | Q6QP46 | 0.0 | Q6QP46_MAIZE; Anthocyanin biosynthesis regulatory protein Pl1_B73 | ||||
STRING | GRMZM2G701063_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-56 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G701063_P01 |