PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G700665_P02
Common NameLOC103635944, Rap2.7, ZEAMMB73_516893, Zm.7856
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 455aa    MW: 49130.6 Da    PI: 7.7839
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G700665_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-17152201155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GRMZM2G700665_P02 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 201
                        78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.43E-16152210IPR016177DNA-binding domain
PfamPF008475.1E-9152201IPR001471AP2/ERF domain
CDDcd000186.51E-11153211No hitNo description
SMARTSM003803.3E-32153215IPR001471AP2/ERF domain
PROSITE profilePS5103217.794153209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-17153210IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-6244288IPR016177DNA-binding domain
CDDcd000184.14E-12244289No hitNo description
SMARTSM003801.3E-12245293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MQLDLNVAEA PPPVEMEASD SGSSVLNASE AASAGGAPAP AEEGSSSTPA VLEFSILIRS  60
DSDAAGADED EDATPSPPPR HRHQHQQQLV TRELFPAGAG PPAPTPRHWA ELGFFRADLQ  120
QQQAPGPRIV PHPHAAPPPA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEDDMKQM GSLSKEEFVH VLRRQSTGFS  240
RGSSRYRGVT LHKCGRWEAR MGQFLGKKAY DKAAIKCNGR EAVTNFEPST YHGELPTEVA  300
DVDLNLSISQ PSPQRDKNSC LGLQLHHGPF EGSELKKTKI DDAPSELPGR PRQLSPLVAE  360
HPPAWPAQPP HPFFVFTNHE MSASGDLHRR PAGAVPSWAW QVAAAAPPPA ALPSSAAASS  420
GFSNTATTAA TTAPSASSLR YCPPPPPPSS HHHPR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1632590.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G700665
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G700665_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0843090.0BT084309.2 Zea mays full-length cDNA clone ZM_BFb0100C04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656537.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotB8AXC31e-152AP21_ORYSI; APETALA2-like protein 1
TrEMBLA6NAX80.0A6NAX8_MAIZE; AP2 domain transcription factor
STRINGGRMZM2G700665_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.25e-84related to AP2.7
Publications ? help Back to Top
  1. Salvi S, et al.
    Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize.
    Proc. Natl. Acad. Sci. U.S.A., 2007. 104(27): p. 11376-81
    [PMID:17595297]