PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G700011_P02 | ||||||||
Common Name | LOC100274293, MYBR72, ZEAMMB73_465215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 162aa MW: 17808 Da PI: 9.3799 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 7 | 82 | 6 | 46 |
HHHHHHHHHHHHHTTTT....................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGgg....................................tWktIartmgkgRtlkqcksrwqk 46 +e+ +l++a + gg +W++Ia+ ++ gRt++++++ w++ GRMZM2G700011_P02 7 PELSIRLARALISYAGGapesraeevrqelqaevvrytnyhaliwatncvrvcRWSLIANQLP-GRTGNDVRNCWNT 82 677777777777777777777777777777777777777777777778888889*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.38E-8 | 48 | 93 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-12 | 56 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.51E-5 | 60 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MRPASSPELS IRLARALISY AGGAPESRAE EVRQELQAEV VRYTNYHALI WATNCVRVCR 60 WSLIANQLPG RTGNDVRNCW NTKLSKQLRQ RGIDPTAPSP TSCTSSPAPS PYGDDGAGEI 120 IDATLESWTA TRRRGWTSSS PSCWPTRPTT LAPPPRWAGS WA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G700011 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G700011_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042708 | 0.0 | BT042708.1 Zea mays full-length cDNA clone ZM_BFc0017B12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142129.1 | 1e-113 | uncharacterized protein LOC100274293 | ||||
TrEMBL | B4G020 | 1e-112 | B4G020_MAIZE; MYB-related transcription factor | ||||
STRING | GRMZM2G700011_P02 | 1e-113 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 3e-11 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G700011_P02 |
Entrez Gene | 100274293 |