PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G589696_P02
Common NameLOC100193142, ZEAMMB73_213048
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Dof
Protein Properties Length: 288aa    MW: 30589.6 Da    PI: 8.6357
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G589696_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.76.9e-4053113262
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                        +++ lkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++s
  GRMZM2G589696_P02  53 HDQPLKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRAS 113
                        7899******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3151111IPR003851Zinc finger, Dof-type
PfamPF027012.8E-3354111IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.22757111IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105995IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQQTWSRAFQ GIVVPEEPGM GGSSSSPSAE LIACPRPPMH AAAADHRRLR PQHDQPLKCP  60
RCESTHTKFC YYNNYSLSQP RYFCKTCRRY WTKGGSLRNV PVGGGCRKNK RASAKKHPAA  120
TPMQPRHVAE TGLHLSFSGV QLPPPPSPAA AADPLCSLGL LDWKYDPILA GSGGAAAGSL  180
DGASSEAHFA GAGMLGIPGG GECYALSSLR YAADLGEHLQ LQGLPFGLRA EQESMEVKAA  240
ATERTLSLDW YSETSRAPES ALSSLGALGL WSGMLRGAHQ HHGSSAAI
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G589696
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G589696_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0629570.0BT062957.1 Zea mays full-length cDNA clone ZM_BFc0012J21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131772.11e-176Dof zinc finger protein DOF2.1
TrEMBLC0P3T80.0C0P3T8_MAIZE; Uncharacterized protein
TrEMBLK0DF240.0K0DF24_MAIZE; DOF43 transcription factor (Fragment)
STRINGGRMZM2G589696_P011e-176(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.11e-37Dof family protein