PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G589696_P01 | ||||||||
Common Name | LOC100193142, ZEAMMB73_213048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 297aa MW: 31442.7 Da PI: 8.2743 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.7 | 7.2e-40 | 62 | 122 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++s GRMZM2G589696_P01 62 HDQPLKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRAS 122 7899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 60 | 120 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.9E-33 | 63 | 120 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.227 | 66 | 120 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 68 | 104 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MMAGAPPTMH ICMDSDWLKG IVVPEEPGMG GSSSSPSAEL IACPRPPMHA AAADHRRLRP 60 QHDQPLKCPR CESTHTKFCY YNNYSLSQPR YFCKTCRRYW TKGGSLRNVP VGGGCRKNKR 120 ASAKKHPAAT PMQPRHVAET GLHLSFSGVQ LPPPPSPAAA ADPLCSLGLL DWKYDPILAG 180 SGGAAAGSLD GASSEAHFAG AGMLGIPGGG ECYALSSLRY AADLGEHLQL QGLPFGLRAE 240 QESMEVKAAA TERTLSLDWY SETSRAPESA LSSLGALGLW SGMLRGAHQH HGSSAAI |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G589696 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G589696_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035326 | 0.0 | BT035326.1 Zea mays full-length cDNA clone ZM_BFb0055G17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131772.1 | 0.0 | Dof zinc finger protein DOF2.1 | ||||
TrEMBL | A0A3L6EX91 | 0.0 | A0A3L6EX91_MAIZE; Dof zinc finger protein DOF5.6 | ||||
TrEMBL | B4FDY8 | 0.0 | B4FDY8_MAIZE; Dof zinc finger protein DOF2.1 | ||||
STRING | GRMZM2G589696_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 2e-39 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G589696_P01 |
Entrez Gene | 100193142 |