PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G546369_P01
Common NameZEAMMB73_934516
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 517aa    MW: 57040.6 Da    PI: 8.5893
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G546369_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-082993271747
                        HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  17 kqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +++G + Wk+I +++g ++t  q++s+ qky
  GRMZM2G546369_P01 299 QLFGRD-WKKIEEHVG-TKTTVQIRSHAQKY 327
                        667766.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF479543.02E-1965192IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.101.4E-1886186IPR013763Cyclin-like
PfamPF001342.8E-1487192IPR006671Cyclin, N-terminal
CDDcd000433.71E-1087185No hitNo description
Gene3DG3DSA:1.10.472.101.3E-4187241IPR013763Cyclin-like
SuperFamilySSF466891.03E-7296333IPR009057Homeodomain-like
CDDcd001670.00107296328No hitNo description
TIGRFAMsTIGR015576.5E-8298330IPR006447Myb domain, plants
PfamPF002491.9E-6298327IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.510.108.2E-5396468No hitNo description
PfamPF077145.7E-5439475IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
SuperFamilySSF561121.66E-5439474IPR011009Protein kinase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MPRLSLTVTD DAAAMPFALR LGGSPALRPG SQSPSWLRFG GRAGVRKALF CSAEDARRCG  60
SDGGEREHMP RACYGERLRG GGLCIHREAI DWIWKAYTHY SFHPLTAYLA VNYLNRFLSL  120
SECLSYWNKD WMTQLLSVAC VLHFRFRWLP KMEEIPVMQS LDLQVGDVCY VFEAKTVHRM  180
ELLVLTTLNW RMKAITPFSY MDYFLNKLNG GNTNMIVILL REIGTGCLGF RPSEIAAAVA  240
ATVAGEVDAT GIENAYAHID KEPIDETHVP EVINEVPKKF QFHLPLYHWR RHQRSHMLQL  300
FGRDWKKIEE HVGTKTTVQI RSHAQKYFVK VQKLGLAVGL PPMYPRRHFA MQQQQQSSVA  360
GGSSAAAMPL LHGRQPTCAP VAMPGLAEPD AVAHHGSIGW SSPSVVVPAA SSDGGGKDAR  420
LGLGVGGRRF GSRGKYLVLH MQVDVFSFGI VLWKILTGEE PYANMHCGAI IAASDEILAV  480
DTPSEGGDAV IVSSSDNSTS TPSACNLARF IGQGYKQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G546369
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G546369_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9109585e-77FJ910958.1 Zea mays subsp. mays Mu tranposon insertion Mu1009215 flanking sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G546369_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.21e-16MYB_related family protein