PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G544539_P01
Common NameZEAMMB73_959922
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 349aa    MW: 35678.3 Da    PI: 9.4182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G544539_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18146195255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f++ae Aa+a++ a+++++g
  GRMZM2G544539_P01 146 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDSAEAAARAYDGAALRFRG 195
                        7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.7E-32146205IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22146205IPR016177DNA-binding domain
SMARTSM003804.7E-36146209IPR001471AP2/ERF domain
PROSITE profilePS5103225.449146203IPR001471AP2/ERF domain
PfamPF008471.6E-12146195IPR001471AP2/ERF domain
PRINTSPR003673.2E-11147158IPR001471AP2/ERF domain
CDDcd000188.18E-16154205No hitNo description
PRINTSPR003673.2E-11169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MATAAAPWQE SGSRQAREMS AMVAALARVV AGSAAPPAKG PGGAGLLAQA QAQDASMAEA  60
CWPYPYAELQ PHVAEPSPSR FVLHGHSATQ LSEEYWPAAA AAAASSSQHR AASAGADDDE  120
LPSPPSAGGV SSSSTSASNR AAARRRYRGV RQRPWGKWAA EIRDPHKAAR VWLGTFDSAE  180
AAARAYDGAA LRFRGSRAKL NFPESATLAS APRGPTTATA QQRQHPSLAP AARPARPEAL  240
LESQALPAAG TDPYSEYARF LQSGSGGGPS ASSGVLPTTS VSATLLPAPP PSTAASAATA  300
YGFGAEGEAL GGYGYLSPPQ SRAGSGTPPA AWASVYSSSY PPWRWDQSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-22145203463ATERF1
3gcc_A5e-22145203463ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G544539
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G544539_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032862e-69AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08.
GenBankAP0149572e-69AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-69CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156938.11e-161ethylene-responsive transcription factor ERF115
TrEMBLA0A1D6ITZ00.0A0A1D6ITZ0_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G544539_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-16ERF family protein