PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G531231_P01 | ||||||||
Common Name | ZEAMMB73_830022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 27198.9 Da PI: 10.2617 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.3 | 6.4e-26 | 39 | 80 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 krien +nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss GRMZM2G531231_P01 39 KRIENMTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSS 80 79**************************************97 PP | |||||||
2 | SRF-TF | 91.4 | 4.6e-29 | 178 | 227 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng lKKA+ELSvLCdaeva+++fss+g lyey+ GRMZM2G531231_P01 178 KRIENTTNRQVTFSKRRNGPLKKAYELSVLCDAEVALVVFSSRGCLYEYA 227 79***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-30 | 31 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.927 | 31 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.68E-30 | 32 | 80 | No hit | No description |
SuperFamily | SSF55455 | 7.72E-24 | 32 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-23 | 40 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.651 | 170 | 230 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.3E-37 | 170 | 229 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-27 | 171 | 230 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.58E-36 | 171 | 229 | No hit | No description |
PRINTS | PR00404 | 6.5E-31 | 172 | 192 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-24 | 179 | 226 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-31 | 192 | 207 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-31 | 207 | 228 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MTIVTTDLSC GPSSKAKGGQ PAVTVSGGDR QGSSKIEIKR IENMTNRQVT FCKRRNGLLK 60 KAYELSVLCD AEVALVVFSS VAASTSTPTT GLYTRTSAVI SLGDSSSLAG LLLAQTWSSR 120 DWFGETKRER EREPRALEKN TFTKTDLSCG PSSKAKGGQP AVTVSGGDRQ GRGKIEIKRI 180 ENTTNRQVTF SKRRNGPLKK AYELSVLCDA EVALVVFSSR GCLYEYANNM PLRVRQQQVM 240 RNKFAAEDE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3kov_B | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3kov_I | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3kov_J | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3p57_A | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3p57_B | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3p57_C | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3p57_D | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3p57_I | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3p57_J | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
5f28_C | 7e-18 | 32 | 227 | 2 | 58 | MEF2C |
5f28_D | 7e-18 | 32 | 227 | 2 | 58 | MEF2C |
6byy_A | 6e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6byy_B | 6e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6byy_C | 6e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6byy_D | 6e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6bz1_A | 7e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6bz1_B | 7e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6bz1_C | 7e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6bz1_D | 7e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.103434 | 1e-118 | ear| meristem| pericarp| pollen |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G531231 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G531231_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | X91884 | 1e-160 | X91884.1 Z.mays ZEMc gene. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020400119.1 | 2e-54 | uncharacterized protein LOC103639757 | ||||
TrEMBL | A0A1D6NUQ5 | 4e-63 | A0A1D6NUQ5_MAIZE; Agamous-like MADS-box AGL8-like protein | ||||
STRING | GRMZM2G531231_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09960.3 | 2e-32 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G531231_P01 |