PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G529859_P02
Common NameYAB8
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 223aa    MW: 23896.3 Da    PI: 8.9889
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G529859_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY182.22.8e-56518024170
              YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslkee.......................lleelkveeenlksnveke 89 
                        v vP +slfk+vtvrCGhC++llsvnl+       + a  +hl+ +   +                       + +   + +++++   +++
  GRMZM2G529859_P02   5 VGVPCSSLFKTVTVRCGHCANLLSVNLRGLLlppAAPAPPNHLNFAH--SllsptsphglldelalqqapsflMEQASANLSSTMTGRSSNS 94 
                        89**************************9985542223334544322..1234478889888888765555432222333333444444445 PP

              YABBY  90 esastsvssekl....senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        ++as+  +   +    + +++ e+p++ p v+rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  GRMZM2G529859_P02  95 SCASNLPPPAPMpaaqPVQQEAELPKTAPsVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 180
                        555555555555888888999999998777******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.0E-575180IPR006780YABBY protein
SuperFamilySSF470955.24E-8119173IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-4129172IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MRAQVGVPCS SLFKTVTVRC GHCANLLSVN LRGLLLPPAA PAPPNHLNFA HSLLSPTSPH  60
GLLDELALQQ APSFLMEQAS ANLSSTMTGR SSNSSCASNL PPPAPMPAAQ PVQQEAELPK  120
TAPSVNRPPE KRQRVPSAYN RFIKDEIQRI KAGNPDITHR EAFSAAAKNW AHFPHIHFGL  180
MPDQGLKKTF KTHQDGAEDM LLKDDLYAAA AAAAAANMGI TPF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.939340.0ear| meristem| pollen| shoot| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G529859
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Preferentially expressed in immature organs containing meristems and organ primordia. Expressed in phloem of developing vascular tissues of young seedling shoots. Expressed in the phloem of midvein vasculature of young leaves. Does not show polar expression pattern in leaf primordia. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17676337}.
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G529859_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400480.0BT040048.1 Zea mays full-length cDNA clone ZM_BFc0062B12 mRNA, complete cds.
GenBankKJ7268500.0KJ726850.1 Zea mays clone pUT3390 C2C2-YABBY transcription factor (YAB8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306695.11e-160protein YABBY 4
SwissprotA2X7Q31e-100YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-100YAB4_ORYSJ; Protein YABBY 4
TrEMBLB4FSG01e-162B4FSG0_MAIZE; Axial regulator YABBY 1
STRINGGRMZM2G529859_P021e-163(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Representative plantOGRP46851123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-49YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]