PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G526668_P02
Common NameZEAMMB73_056372, Zm.130863
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 322aa    MW: 33035.1 Da    PI: 7.4199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G526668_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.9e-15149195354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r+h+e+ErrRR+riNs +++Lr+llP+       K +Ka+ L +++e++k+L
  GRMZM2G526668_P02 149 RSHSEAERRRRQRINSHLARLRSLLPNT-----SKTDKASLLAEVIEHVKEL 195
                        78*************************7.....6****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.269146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.28E-15149198No hitNo description
SuperFamilySSF474594.58E-15149204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-12149195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14150217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-14152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.2E-4244284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MWEGGGFHGS HEALLLQAAG SGAADYGHGA GPALLPWLGP AAGAAPGFSY MAPHHAQPGP  60
SGAEAAASPF GFGGGGYSDG GVGGQFGVFG GPETALPAPH GLAAAAGGGT SAMQHGSRMV  120
SGLLGTLQME LGRMAAKEIM DAKALAASRS HSEAERRRRQ RINSHLARLR SLLPNTSKTD  180
KASLLAEVIE HVKELKRQTS AVLDVEGEEA AAARQRLQLL PTEADDLAVD ATEDGEGRLV  240
VRASLCCEDR AGLIPDIARA LAALRLRAHR AEIATLGGRV RNEALRGVMD CKTASSDTSS  300
SSNGGGSMKR QRMSGAHEQG SL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G526668
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G526668_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9655311e-174EU965531.1 Zea mays clone 286711 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678584.11e-172transcription factor AIG1
SwissprotQ9S7Y12e-60BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1D6Q1G91e-171A0A1D6Q1G9_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G526668_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]