PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G522066_P01 | ||||||||
Common Name | Zm.53685 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 121aa MW: 14076.5 Da PI: 11.4418 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.5 | 3.3e-15 | 14 | 112 | 1 | 99 |
EEEE-..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 f++vl++ +v+ + ++l++ fa+eh +g ++ l l+ + ++W v++ + + +++ + W +Fv++n+L+ ++vF+l++ ++ GRMZM2G522066_P01 14 FVTVLMKTHVGHKnSMLTVHHGFAAEHlEGR--SHEVLLLRPNREERWCVRYYHASHTRGFNC-RRWVKFVRENRLRKDHVCVFELIKGaTR 102 77888888887663778**********7544..333566666888*******65666666655.59*********************888** PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++++v+v+rk GRMZM2G522066_P01 103 TTMLVHVLRK 112 *******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-18 | 7 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.33E-17 | 7 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.38E-14 | 12 | 111 | No hit | No description |
SMART | SM01019 | 3.3E-11 | 14 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-13 | 14 | 112 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.151 | 15 | 113 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MRSLVSVQPG NPAFVTVLMK THVGHKNSML TVHHGFAAEH LEGRSHEVLL LRPNREERWC 60 VRYYHASHTR GFNCRRWVKF VRENRLRKDH VCVFELIKGA TRTTMLVHVL RKADGRLALV 120 A |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G522066 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G522066_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808341.1 | 1e-66 | B3 domain-containing protein Os12g0592300-like | ||||
Swissprot | Q2QMT2 | 8e-50 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A1D6KEY8 | 4e-82 | A0A1D6KEY8_MAIZE; B3 domain-containing protein | ||||
STRING | GRMZM2G522066_P01 | 2e-84 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 | Representative plant | OGRP6299 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 4e-08 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G522066_P01 |