PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G516301_P01
Common NameWRKY80, ZEAMMB73_768940, Zm.162261
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 229aa    MW: 24138.9 Da    PI: 7.8398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G516301_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-30120178159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++dp++v++tY g Hnh 
  GRMZM2G516301_P01 120 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAEGCGVKKRVERDSDDPRYVVTTYDGVHNHA 178
                        59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-31108180IPR003657WRKY domain
SuperFamilySSF1182902.48E-27112180IPR003657WRKY domain
PROSITE profilePS5081131.938115180IPR003657WRKY domain
SMARTSM007743.9E-34120179IPR003657WRKY domain
PfamPF031067.3E-24121177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAASLGLAHE AAPFYAAAYP PAGAAYAYLA PPPGDLVVEF PPRAATMADD CCYQFGQEMG  60
GAYCSPPVFD NGMTSLLNYG VEGDGRRPVG GPAGGTGNGG GRPRPASRIG FRTRSEVDVL  120
DDGFKWRKYG KKAVKSSPNP RNYYRCSAEG CGVKKRVERD SDDPRYVVTT YDGVHNHAAP  180
GAAYLCPPPP PRGAAHYSPP VAAPSWSAAL DAWEAQLHRH AAAAAHSSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-27110180777Probable WRKY transcription factor 4
2lex_A5e-27110180777Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G516301
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G516301_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0646200.0BT064620.1 Zea mays full-length cDNA clone ZM_BFc0191G11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344470.11e-165uncharacterized protein LOC100384623
TrEMBLC0P8K11e-164C0P8K1_MAIZE; Putative WRKY transcription factor 50
STRINGGRMZM2G516301_P011e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-37WRKY DNA-binding protein 50