PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G480434_P01 | ||||||||
Common Name | EREB108, LOC103645148 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 21963.9 Da PI: 4.8336 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.1 | 1.3e-14 | 33 | 81 | 4 | 56 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +GVr+++ +g+W+AeIr+p++ r + ++g+f +a +Aa a++aa +++ge GRMZM2G480434_P01 33 TGVRFRH-WGKWAAEIRVPRT---REKLWIGTFESARQAALAYDAAVFCFYGE 81 6******.**********965...4**********************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.0E-22 | 31 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.216 | 31 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-16 | 31 | 84 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-22 | 32 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-6 | 32 | 43 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.4E-9 | 33 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.00E-21 | 34 | 93 | No hit | No description |
PRINTS | PR00367 | 2.8E-6 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MCKDKSALLL EAISSGAAER KARARRQKLS SWTGVRFRHW GKWAAEIRVP RTREKLWIGT 60 FESARQAALA YDAAVFCFYG ERAPKARKPN FPAMPRPEVD EGSRLHLSVA EVKVIAERHA 120 RDVDALLPPM ADPDSAAATD DDLVMAPPPV AVAVDAPSDG AGGPDLDQML SAFDIDAFGA 180 ELDSMTFLVS DDEYYAAEPA CA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G480434 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G480434_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727682 | 0.0 | KJ727682.1 Zea mays clone pUT5610 AP2-EREBP transcription factor (EREB108) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008666483.1 | 1e-144 | ethylene-responsive transcription factor ERF016 | ||||
TrEMBL | A0A060D6E2 | 1e-143 | A0A060D6E2_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GRMZM2G480434_P01 | 1e-143 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 2e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G480434_P01 |
Entrez Gene | 103645148 |