PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G479610_P01 | ||||||||
Common Name | CA5P2, ZEAMMB73_842998 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YC | ||||||||
Protein Properties | Length: 129aa MW: 13369.1 Da PI: 8.0925 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 99.6 | 2.4e-31 | 22 | 111 | 19 | 99 |
NF-YC 19 helPlarikkilk.........adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k ad +mis+eaPv++skacelf+ elt r+w + + krrt+++ d+a+av +td fdflvd+v d GRMZM2G479610_P01 22 HALPLARIKKIMKrsageaaaaADGGARMISCEAPVVFSKACELFVAELTRRAWAATLDGKRRTVHREDVATAVHNTDLFDFLVDVVTAD 111 89**********955555444446779***********************************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.54E-24 | 18 | 113 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.3E-31 | 19 | 96 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-15 | 24 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007022 | developmental stage | seed imbibition stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MRQARPYSGI FCGGVSARTG PHALPLARIK KIMKRSAGEA AAAADGGARM ISCEAPVVFS 60 KACELFVAEL TRRAWAATLD GKRRTVHRED VATAVHNTDL FDFLVDVVTA DTAGGTGGGG 120 HDGDGDGAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-30 | 22 | 108 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G479610 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G479610_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727010 | 0.0 | KJ727010.1 Zea mays clone pUT3991 CCAAT-HAP5 transcription factor (CA5P2) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656973.1 | 1e-88 | uncharacterized protein LOC103636395 | ||||
Swissprot | Q8LCG7 | 7e-31 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A3L6DJD0 | 2e-87 | A0A3L6DJD0_MAIZE; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | K7W2B1 | 2e-87 | K7W2B1_MAIZE; CCAAT-HAP5 transcription factor (Fragment) | ||||
STRING | GRMZM2G479610_P01 | 4e-88 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11658 | 33 | 39 | Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-26 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G479610_P01 |
Publications ? help Back to Top | |||
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