PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G479110_P01
Common Namecl3986_1, Zm.3355
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARR-B
Protein Properties Length: 676aa    MW: 73063.2 Da    PI: 6.3096
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G479110_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.7e-28212265155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  GRMZM2G479110_P01 212 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVERLTRENVASHLQKYRL 265
                        79*******************.********************************8 PP
2Response_reg76.78.2e-26231311109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+p+ +++l+++l++ +y +v+++ ++  al +l++++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +
  GRMZM2G479110_P01  23 VLAVDDDPVCLKVLENLLRRCQY-HVTTTNQAVVALSMLRQNRdlFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGI 112
                        799********************.***************99999********************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+  eel++
  GRMZM2G479110_P01 113 THGACDYLLKPVRLEELRN 131
                        *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.9E-1782676IPR017053Response regulator B-type, plant
SuperFamilySSF521723.56E-3420142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.5E-4120157No hitNo description
SMARTSM004484.1E-3021133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.94822137IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.75E-2524136No hitNo description
PROSITE profilePS5129412.827209268IPR017930Myb domain
SuperFamilySSF466891.13E-19210269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-30210270IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-25212265IPR006447Myb domain, plants
PfamPF002491.5E-6214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MRPEERDAAV GRVRDQFPVG MRVLAVDDDP VCLKVLENLL RRCQYHVTTT NQAVVALSML  60
RQNRDLFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETKTVMK GITHGACDYL  120
LKPVRLEELR NIWQHVVRRK FSNCDRANND GYEECNRPSN ADFDLAHSQI TAGPPDQSGR  180
PSKKRKEYHS EEEDEGEESN GQDNDDPSAP KKPRVVWSVE LHRKFVAAVN QLGIDKAVPK  240
RILELMNVER LTRENVASHL QKYRLYLKRL SAVASQQASI VAALGGNDPF MRMSAFEGLH  300
GYQSFVSSAA LPSFSPQGLL NRNNPASFAI QGVSASRPIQ IATGNTTMSH SIGDPNDKYH  360
LSLPGTSCLQ GNLAQGLPTP VGQVQLPQKW IHEETDDLST ILSASGRANS GVPGTLQSVT  420
NSHLLQQGFV ERRQDKVVIQ PSSSASSDRP EGTVGVSSSL MDSCATQQRV VPLSAFSSSA  480
SPMNGSFCSN GVAELGATSS GGTSIFPSND LRIERDSKVG ASSFGSVILL SPDTVPNQKY  540
LNFGGGSDLR SNMEGGNAGN LLNPKLLWSC LPASQPPNLI GSHHPMSQRL NLGGSMVRQT  600
TASASAAAPQ TRIDMFISGD APKSASDLSF PKVHSELSSS SCSFDGLLNS IIKVEKDDAS  660
FSDDLGCDLY SLGACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-25208271164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.33550.0aerial organ| endosperm| glume| meristem| root| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G479110
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G479110_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9456060.0EU945606.1 Zea mays clone 279188 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454708.10.0two-component response regulator ORR23
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLA0A3L6ER260.0A0A3L6ER26_MAIZE; Two-component response regulator ORR23
STRINGGRMZM2G479110_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-111response regulator 12