PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G478965_P01
Common NameEREB166
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 362aa    MW: 38182.7 Da    PI: 5.7879
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G478965_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.8e-17208254554
                AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                        GVr+++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++
  GRMZM2G478965_P01 208 GVRRRP-WGKFAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMR 254
                        9*****.**********44465..***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.903205263IPR001471AP2/ERF domain
PRINTSPR003674.4E-7206217IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-20207265IPR016177DNA-binding domain
CDDcd000187.53E-15208264No hitNo description
SMARTSM003803.5E-29208269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-26208264IPR001471AP2/ERF domain
PfamPF008474.2E-12208254IPR001471AP2/ERF domain
PRINTSPR003674.4E-7229245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEPQFCSSYY CGDAVSAAYV PSDPNHYGLQ HYDDSVVVVD SNCYSNSTMA SSGFQQASSS  60
AYYYYDDHIA YGGDHHHHPS SSSTAWASAS PSPSGAATPS SSHHQQQLLH FGGGGADEYY  120
TYQEDGMEDQ FSALTLMGAA CVSASSTSSG ASTTDTPAPG AYSSPATWTT MQPNAAAHGA  180
SACPRDYLLL QEEAAAGGGA GGDAPLIGVR RRPWGKFAAE IRDSTRNGER VWIGTFDTPE  240
AAALAYDQAA YSMRSSSAVL NFPVEHVQES LRALGLSVDA GVSPVLALKR RHCIRKRLPK  300
NKTAAGAKEE RTKVAASSSS RGHGGHGHGL GKQKQQQAAP CVLELEDLGA DYLEELLALS  360
DQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-252082661775Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G478965
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G478965_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278830.0KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653664.10.0ethylene-responsive transcription factor 15
TrEMBLA0A060D7N90.0A0A060D7N9_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G478965_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-36ethylene response factor 1