PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G478501_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YB | ||||||||
Protein Properties | Length: 200aa MW: 22339.6 Da PI: 4.1706 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 154.6 | 1.7e-48 | 13 | 108 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +eqdrflP+an++ im++++P+n+ki++da+e++qecvsefisf+tseasdkc +e+rktin +d++w+l+tlGfe+yveplk+yl++yre GRMZM2G478501_P01 13 KEQDRFLPVANIGLIMRRAVPENGKIARDARESIQECVSEFISFITSEASDKCVKERRKTINDNDIIWSLGTLGFEEYVEPLKIYLNNYREE 104 89*****************************************************************************************9 PP NF-YB 94 egek 97 ++ek GRMZM2G478501_P01 105 QKEK 108 8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.4E-46 | 11 | 112 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.87E-35 | 15 | 109 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-23 | 18 | 81 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.8E-18 | 46 | 64 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 49 | 65 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.8E-18 | 65 | 83 | No hit | No description |
PRINTS | PR00615 | 7.8E-18 | 84 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MSEVEANTGG GGKEQDRFLP VANIGLIMRR AVPENGKIAR DARESIQECV SEFISFITSE 60 ASDKCVKERR KTINDNDIIW SLGTLGFEEY VEPLKIYLNN YREEQKEKPL RSGMDARLLH 120 QGNRASVEES GLRRLMMAGS NDDTIEVDGN EERWLCGLAK DDDEDDLWED ATKLFGLNTE 180 APIHVGGDQE GGGEEGVEDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 9e-41 | 13 | 103 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 9e-41 | 13 | 103 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G478501 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G478501_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM078742 | 3e-76 | KM078742.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020398603.1 | 4e-64 | nuclear transcription factor Y subunit B-4 | ||||
TrEMBL | A0A1D6MLX8 | 3e-68 | A0A1D6MLX8_MAIZE; Nuclear transcription factor Y subunit B-8 | ||||
STRING | GRMZM2G478501_P01 | 1e-144 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 | Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.6 | 9e-49 | nuclear factor Y, subunit B1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G478501_P01 |