PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G478396_P01 | ||||||||
Common Name | LOC732764, ZEAMMB73_513955, Zm.101387 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WOX | ||||||||
Protein Properties | Length: 235aa MW: 26471.7 Da PI: 10.2422 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64 | 2.1e-20 | 13 | 74 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L elF+ r+ps++++++++++l +++ ++V++WFqN++a+e++ GRMZM2G478396_P01 13 KCGRWNPTPEQVKVLTELFRAgLRTPSTDQIQRISAHLgafgKVESKNVFYWFQNHKARERH 74 568*****************99**************************************95 PP | |||||||
2 | Wus_type_Homeobox | 110.7 | 7.9e-36 | 14 | 75 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + RW+PtpeQ+k+L+el+++GlrtP++++iqri+a+L ++Gk+e+kNVfyWFQN+kaRer++ GRMZM2G478396_P01 14 CGRWNPTPEQVKVLTELFRAGLRTPSTDQIQRISAHLGAFGKVESKNVFYWFQNHKARERHH 75 78**********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 5.2E-5 | 12 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.31E-12 | 14 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.5E-18 | 14 | 74 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-8 | 16 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.09E-4 | 16 | 72 | No hit | No description |
PROSITE profile | PS50071 | 9.993 | 20 | 75 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDTEAPSGRV GVKCGRWNPT PEQVKVLTEL FRAGLRTPST DQIQRISAHL GAFGKVESKN 60 VFYWFQNHKA RERHHHKKKK RRRRGAAMAS SSSPDSGSGS GSSEEDGRVA AAADADLVLQ 120 PSPGRSKSKR EARRSYGGGH HRRLVTCKQL AHTHRYVRDV VEQQEEDTWE RPTREAVETL 180 ELFPLKSYVD LEAEKVRRYV VRAGASEQCR DFSFFDVSGG RDPPLLELRL CSFGP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 83 | RHHHKKKKRRRR |
2 | 76 | 81 | KKKKRR |
3 | 77 | 82 | KKKRRR |
4 | 77 | 83 | KKKRRRR |
5 | 78 | 83 | KKRRRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G478396 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryogenesis and crown root formation, it is expressed prior to the morphological differentiation of the root. {ECO:0000269|PubMed:12904206}. | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in the central cells of the quiescent center (QC) of the root. {ECO:0000269|PubMed:12904206}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:12904206}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G478396_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM490238 | 0.0 | AM490238.1 Zea mays mRNA for putative wuschel homeobox protein (wox5A gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657043.1 | 1e-174 | WUSCHEL-related homeobox 9 | ||||
Swissprot | Q8W0F1 | 1e-97 | WOX9_ORYSJ; WUSCHEL-related homeobox 9 | ||||
TrEMBL | K7VNC3 | 1e-172 | K7VNC3_MAIZE; Putative homeobox DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G478396_P01 | 1e-173 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9411 | 36 | 43 | Representative plant | OGRP8406 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11260.1 | 7e-30 | WUSCHEL related homeobox 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G478396_P01 |
Entrez Gene | 732764 |