PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G477533_P01
Common NameLOC103652935, ZEAMMB73_288964
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 440aa    MW: 49243.8 Da    PI: 6.8099
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G477533_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-10171234147
                        TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 
                        r+ WT+e++e+lv+a  ++ ++            W  Ia+t +       +Rt+kq+k++w +y
  GRMZM2G477533_P01 171 RLEWTKEDEEKLVNAWFMHSNDpisgnnksgssFWGQIAATYNstsdpiRHRTAKQLKDHWVTY 234
                        789**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.027166235IPR017877Myb-like domain
SuperFamilySSF466893.89E-6168237IPR009057Homeodomain-like
SMARTSM007171.2E-5170237IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-7170235IPR009057Homeodomain-like
PfamPF002491.5E-6171234IPR001005SANT/Myb domain
CDDcd001672.78E-4173234No hitNo description
PfamPF143032.2E-6276362IPR029466No apical meristem-associated, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSGWSPDLNT FTDLLQSDGS PKTLPLDESS SLHRCSDVSA SLPRALFPAA RPPPYPYPYH  60
LYQYPPSSYG QPPTSQDGIQ ASFPVRPYAP PPPAANGSQA SFQIPPYAPP PYAPPRYGVP  120
PYAPYAPPPY GAPHPYAPPT YGAPPPVAPL SVGSENQAEE NLVPKEKRPK RLEWTKEDEE  180
KLVNAWFMHS NDPISGNNKS GSSFWGQIAA TYNSTSDPIR HRTAKQLKDH WVTYNREVTK  240
FNGFYLQEER LRQSGADDAM VMDAAMARFE GKMGHPFKRH HWWQVVRHEP KWSAKHGLGS  300
RSDSTANKRT RLGVSGEYSS GGTEDTEEEV PRPVGRDRAK AAARKTKTKG KGKEATSSES  360
TSEAFKMKNL WGGLVKAKLL KQWNILKGRS TRDMDPAERR THGRAVKMVE KELGLLYDEE  420
EEPEVEREEE EDEDEIEESD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1037880.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G477533
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G477533_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5176000.0EF517600.2 Zea mays clone BACs ZMMBBb0345O22, ZMMBBc0294D02, ZMMBBb0103L15, ZMMBBb0622H01, and ZMMBBb0335C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662552.10.0ribonuclease 3
TrEMBLA0A3L6EIR90.0A0A3L6EIR9_MAIZE; Glutathione S-transferase T3
STRINGGRMZM2G477533_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3263337