PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G477287_P01 | ||||||||
Common Name | LOC103637216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22133.7 Da PI: 6.9626 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.3e-17 | 29 | 79 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + g+Wv+eIr+ + r++lg++ t+e+Aa+a++aa+++l+g+ GRMZM2G477287_P01 29 PVYRGVRLR--AGKWVSEIRElR-----KpSRIWLGTYPTPEMAAAAYDAAALALRGA 79 68****975..6*********66.....68*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-11 | 29 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-18 | 30 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.993 | 30 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-23 | 30 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-26 | 30 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-7 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-7 | 68 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEQRQQERRT VPTTTTCGGR RARAETRHPV YRGVRLRAGK WVSEIRELRK PSRIWLGTYP 60 TPEMAAAAYD AAALALRGAG AALNFPDAAT ARPPPASASA EHVRAAAAAA AAAAAVGLGD 120 SRHFHGRSDR REVRGHSHSS GADEYERCHG GGGAGSMEGV VDEDDLFEMP RLMLSMAEGL 180 MMTPPVLGPA PAAAALDGDE EGVSLWDHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-13 | 18 | 86 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G477287 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G477287_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC078894 | 3e-70 | AC078894.11 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence. | |||
GenBank | AP014966 | 3e-70 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY258280 | 3e-70 | AY258280.1 Oryza sativa (japonica cultivar-group) CR103 transcription factor gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657683.1 | 1e-148 | ethylene-responsive transcription factor ERF027 | ||||
TrEMBL | A0A1D6K714 | 1e-146 | A0A1D6K714_MAIZE; Ethylene-responsive transcription factor ERF025 | ||||
STRING | GRMZM2G477287_P01 | 1e-147 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 6e-17 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G477287_P01 |
Entrez Gene | 103637216 |