PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G477238_P01
Common NameLOC103627002
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 540aa    MW: 58738.7 Da    PI: 6.6642
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G477238_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-31125178255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  GRMZM2G477238_P01 125 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 178
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.601121181IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-29121179IPR009057Homeodomain-like
SuperFamilySSF466895.38E-14124179IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-22125180IPR006447Myb domain, plants
PfamPF002499.5E-9126177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MVAREEQAMT REVKGKGLLV DILDDHEEVS IDNSKLLDLN EGFDVEDEGG EAAGDDEDEE  60
DEGEEGDDGG STTDVGGSAS SSNNRSSNNN NSESEKADAK GGSKSEVSGE QRVPSVRQYN  120
RSKLPRLRWT PDLHMAFVHA VERLGGQERA TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK  180
LDQDGRPRGA VSSVYSPMDF HFMRADHRRF HNMSFFQRAA ASASSSGGQE RGGFFASRNF  240
STPELSRLYG LLHHRPAPTQ TFDFRNSSFR NHEWPWAASS NQQEAMTISR KHVVMPPSTS  300
PQTHASLASS AALRSDRRWW PFTEAGAAVA AGEHRAGTGV TSVKFDNCVG SSSRPLPLPM  360
SPAVCGDRRL PFRWRHGGSS RDVVVGYPGS SSMVAKRSSS DPVVIDDGHQ LERQNSKHVV  420
EPTRASTATP AEEDEACLKR RPSSPVEAQD ATTTTLDLQL SLSPTTASAK KRKTSGSFFM  480
DDTSCEFSTS LSLSPPVAAP AVSTQQRQEK TRRSSDDNGG GGGVLGQSTL DLTMSIRALE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-18126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-18126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-18126180357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-18126180357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G477238
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G477238_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5406074e-62JX540607.1 Paspalum vaginatum clone StvCtg_09077 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645578.10.0uncharacterized protein LOC103627002 isoform X1
TrEMBLA0A1D6H6480.0A0A1D6H648_MAIZE; Homeodomain-like superfamily protein
STRINGGRMZM2G477238_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-34G2-like family protein