PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G475984_P01
Common NameLOC103649650
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 273aa    MW: 28090 Da    PI: 6.2308
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G475984_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.4e-30144202159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYG+K+vk+s++pr+YYrC+ +gC vkk+ver+++dp++v++tY g Hnh 
  GRMZM2G475984_P01 144 LDDGFKWRKYGKKTVKSSPNPRNYYRCSAEGCGVKKRVERDSDDPRYVVTTYDGVHNHA 202
                        59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-31131202IPR003657WRKY domain
SuperFamilySSF1182905.89E-27136202IPR003657WRKY domain
PROSITE profilePS5081130.561139204IPR003657WRKY domain
SMARTSM007747.1E-34144203IPR003657WRKY domain
PfamPF031065.9E-24145201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAASLGLAHE TSYAAYHPPS APASSYFPPL PPPDLLVADL PPPAAATMAD DYFQFGFDGQ  60
EMVGAPAPAC GGYDCSAPVF ANSSSDAAAA VGNGMSLLSY GVDGDGDGRR PMSGPPYGTG  120
GNGGGRPPSS SRIGFRTRSE VDVLDDGFKW RKYGKKTVKS SPNPRNYYRC SAEGCGVKKR  180
VERDSDDPRY VVTTYDGVHN HAALGPGAAS YLCQPPPPRG ATATATVTPF SPPRSASAPA  240
PLAAAPSWSA ACDAWEAQLH AAAAAAHSSE SSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-26129201274Probable WRKY transcription factor 4
2lex_A1e-26129201274Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G475984
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G475984_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1573190.0AC157319.2 Zea mays clone ZMMBBb-136E2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673603.10.0probable WRKY transcription factor 48
TrEMBLA0A1D6MI090.0A0A1D6MI09_MAIZE; Putative WRKY transcription factor 50
STRINGGRMZM2G475984_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-36WRKY DNA-binding protein 50