PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G475289_P02 | ||||||||
Common Name | Zm.38338 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 310aa MW: 33074.6 Da PI: 10.2027 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.9 | 1e-14 | 135 | 186 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+++ A++Y+k+L+ GRMZM2G475289_P02 135 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YTPRGDQATVVGGAIDYVKQLE 186 79****************************...9*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.02E-15 | 126 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.69E-13 | 133 | 187 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.1E-15 | 133 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.072 | 134 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-12 | 135 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 140 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MMCLSCSPSG DGVVMTTVAV MEQWADKQQQ AASTNAAAAA AQMPFLALLQ GAGVVVEAEQ 60 QEEQHHDGRK RQAFARAVSD LDLLESCVTQ AVAPAAAASA PVAGRTERRR KRQRPRARAA 120 PPPEKRKKPE EAESQRMTHI AVERNRRRLM NDHLASLRSL IPSSYTPRGD QATVVGGAID 180 YVKQLEQQLV ALQAAAAARR GVAGTGAAAV ATVASDGVFV SPQYASYSDS RGAGAGVDVE 240 ATAAVGGHVR VRVAGRRWPG RLVRVVAALE DLRLAVLHLA VTSVGHDAVV YCFNLKVSPV 300 SRRFYFWSCS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 117 | RRRKRQRPRAR |
2 | 109 | 115 | RKRQRPR |
3 | 109 | 127 | RKRQRPRARAAPPPEKRKK |
4 | 135 | 146 | RMTHIAVERNRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G475289 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G475289_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU728691 | 0.0 | EU728691.1 Zea mays RFLP marker p-umc164 full length insert sequence of entire PstI fragment genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023157150.1 | 0.0 | transcription factor bHLH57 | ||||
TrEMBL | A0A1D6JM27 | 0.0 | A0A1D6JM27_MAIZE; Transcription factor bHLH57 | ||||
STRING | GRMZM2G475289_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7957 | 33 | 44 | Representative plant | OGRP14170 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 9e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G475289_P02 |