PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G475289_P01 | ||||||||
Common Name | Zm.38338 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 303aa MW: 32489.9 Da PI: 10.7239 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.9 | 9.8e-15 | 128 | 179 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+++ A++Y+k+L+ GRMZM2G475289_P01 128 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YTPRGDQATVVGGAIDYVKQLE 179 79****************************...9*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.81E-16 | 119 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.8E-15 | 126 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.50E-12 | 126 | 180 | No hit | No description |
PROSITE profile | PS50888 | 15.072 | 127 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-12 | 128 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 133 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MERMQLQLQG SIASSLWADK QQQAASTNAA AAAAQMPFLA LLQGAGVVVE AEQQEEQHHD 60 GRKRQAFARA VSDLDLLESC VTQAVAPAAA ASAPVAGRTE RRRKRQRPRA RAAPPPEKRK 120 KPEEAESQRM THIAVERNRR RLMNDHLASL RSLIPSSYTP RGDQATVVGG AIDYVKQLEQ 180 QLVALQAAAA ARRGVAGTGA AAVATVASDG VFVSPQYASY SDSRGAGAGV DVEATAAVGG 240 HVRVRVAGRR WPGRLVRVVA ALEDLRLAVL HLAVTSVGHD AVVYCFNLKV SPVSRRFYFW 300 SCS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 110 | RRRKRQRPRAR |
2 | 102 | 108 | RKRQRPR |
3 | 102 | 120 | RKRQRPRARAAPPPEKRKK |
4 | 128 | 139 | RMTHIAVERNRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G475289 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G475289_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU728691 | 0.0 | EU728691.1 Zea mays RFLP marker p-umc164 full length insert sequence of entire PstI fragment genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023157150.1 | 0.0 | transcription factor bHLH57 | ||||
TrEMBL | A0A317YIG6 | 0.0 | A0A317YIG6_MAIZE; Transcription factor bHLH70 | ||||
STRING | GRMZM2G475289_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 2e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G475289_P01 |