PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G475263_P01
Common NameARF7, LOC100857063, Zm.18593
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 686aa    MW: 76716.5 Da    PI: 6.2917
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G475263_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.93.3e-22119219198
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+ltpsd++++g +++ +++a+e+      +++ + +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v  ++ 
  GRMZM2G475263_P01 119 FCKILTPSDTSTHGGFSVLRRHANEClpaldmSMP-TPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLIAGDAFVYLRS- 208
                        99****************************96444.45569999*******************************************9944. PP

                        SSEE..EEEEE- CS
                 B3  87 rsefelvvkvfr 98 
                         ++++ +v+v+r
  GRMZM2G475263_P01 209 -ETGQQRVGVRR 219
                        .66666999987 PP
2Auxin_resp93.63.1e-31245326183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t+s+F v+Y+Pr s+s+++v+++k++++ k+ + vGmRfkm+fe++d++ +++sGtvv+  dl+p +W++S+W+ Lk
  GRMZM2G475263_P01 245 ASHAIRTHSIFLVYYRPRLSQSQYIVRLNKYLESSKIGFDVGMRFKMSFEGDDVPIKKFSGTVVDKGDLSP-QWQGSEWKTLK 326
                        789********************************************************************.********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-37108248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-35112234IPR015300DNA-binding pseudobarrel domain
CDDcd100173.31E-17117219No hitNo description
SMARTSM010193.3E-16119221IPR003340B3 DNA binding domain
PfamPF023624.2E-20119219IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152119221IPR003340B3 DNA binding domain
PfamPF065077.5E-27245326IPR010525Auxin response factor
PfamPF023099.7E-7574663IPR033389AUX/IAA domain
PROSITE profilePS5174519.453584666IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MAQGAGRDPE ELFEELWRAC AGPLVELPQT NERVFYFLQG HLEQLQEPTD PALLAEQIKM  60
FQVPNKILCK VVNVELKAET ETDEMYAQIT LQPEPDQVDL PQLPEPPLQE TSRPVVHSFC  120
KILTPSDTST HGGFSVLRRH ANECLPALDM SMPTPTQELI TKDLHGSEWR FKHIYRGQPR  180
RHLLTTGWST FVTSKKLIAG DAFVYLRSET GQQRVGVRRL VQKQSTMPAS VISSQSMHLG  240
VLASASHAIR THSIFLVYYR PRLSQSQYIV RLNKYLESSK IGFDVGMRFK MSFEGDDVPI  300
KKFSGTVVDK GDLSPQWQGS EWKTLKVKWD EATNLNGPER VSSWEIEPFD ASAPAITMPV  360
QPSMKNKRPR ETAEGLDIHA LEPAQEFWLS GRPEQHEKTS VSSSEPKHQV AWTSERAGYS  420
AMSSSICQNS AVTGSWFKGF NSSGSHPSLP EISQKLFQVT SNDARVPPWP GLSAYHADEP  480
SSKLSCNTAL CSYQTEEVAP RFSNAVEEEK KEPGMFRLFG VNLINHARSS ATADKTSVGA  540
GETSARAAGS FEDSAQLSRV TKDHTHMVNG SPREIQSHQS CSGRSRIKVQ MHGNDVCRAV  600
DLGNLDGYEQ LMGEVGEMFE IKDLGSKEKE EWKVTFINDE NETMEVGAVP WQEFCQMVRK  660
IVIHSIGDRG HMEACPCLGQ DGKRDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1441035117357Auxin response factor 1
4ldw_A1e-1441035117357Auxin response factor 1
4ldw_B1e-1441035117357Auxin response factor 1
4ldx_A1e-1441035117357Auxin response factor 1
4ldx_B1e-1441035117357Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.185930.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G475263
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G475263_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587590.0HQ858759.1 Zea mays clone UT1501 ARF transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673473.10.0auxin response factor 1
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLD9HNT40.0D9HNT4_MAIZE; Auxin response factor
STRINGGRMZM2G475263_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Representative plantOGRP1421044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.11e-175auxin response factor 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]