PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G475017_P01
Common NameZEAMMB73_788382, Zm.97988
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 448aa    MW: 48616.8 Da    PI: 7.7853
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G475017_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.7e-114268127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG C yG+rC+++H++
  GRMZM2G475017_P01 42 PGEADCTYYLRTGACGYGERCRYNHPR 68
                       57899********************96 PP
2zf-CCCH39.97e-1389115127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++lC ++a++GtCk+G++CkF H++
  GRMZM2G475017_P01  89 PGQPLCEYYAKNGTCKFGSNCKFDHPR 115
                        589**********************96 PP
3zf-CCCH37.93e-12135159327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tG+Ck+G++CkF+H++
  GRMZM2G475017_P01 135 EKECSYYMKTGHCKFGGTCKFHHPE 159
                        689********************96 PP
4zf-CCCH39.97e-13287313127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C ++++tGtCkyG+ Ck++H++
  GRMZM2G475017_P01 287 PGQPECEHYMKTGTCKYGAACKYHHPQ 313
                        5789*********************97 PP
5zf-CCCH23.97e-08336359427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         +C ++a  G+Ck+G++CkF H++
  GRMZM2G475017_P01 336 QRCAYYAHHGFCKFGPTCKFDHPM 359
                        68********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.6E-64168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3614169IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-94368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-64569IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-54768IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.91588116IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-788115IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-1090115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-690116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-693116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826132160IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5132159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6134159IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4138158IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6286313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859286314IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10288313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5290313IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4292311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929332360IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4332359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5334360IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5335359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEPYAATKGG ESDAGTGLEE SMRKLGLGED DEAGEEKLPE RPGEADCTYY LRTGACGYGE  60
RCRYNHPRDR PAPVNGVGKT TGMEYPERPG QPLCEYYAKN GTCKFGSNCK FDHPRESGFV  120
PVALNNSGFP LRLGEKECSY YMKTGHCKFG GTCKFHHPEL GFLTETPGMY PPVQPSPISS  180
PHPYPHHSNW QMGRPAVVPG SFLPGPYPPM MLPPTVMPMQ GWNPYVSPMN QTTPAGGQQA  240
VPAGPSYGLS HQEPTSAVTY GSHYAQLYSS SGTSSSNIQE YVFPERPGQP ECEHYMKTGT  300
CKYGAACKYH HPQYFSGPKS NCILSPLGLP LRPGSQRCAY YAHHGFCKFG PTCKFDHPMG  360
TPNYSLPAPS LTDVPVAPYP HTFSVTPIAP YLLPPDPRPQ YTLAKDPSAY PPQAPGTTYG  420
PVGAISKVYA RHTLIRSPTS GAAGMQAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.979880.0ear| meristem| ovary| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G475017
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G475017_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9668110.0EU966811.1 Zea mays clone 297536 zinc finger CCCH type domain-containing protein ZFN-like 3 mRNA, complete cds.
GenBankEU9682910.0EU968291.1 Zea mays clone 318354 zinc finger CCCH type domain-containing protein ZFN-like 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357554.10.0zinc finger CCCH type domain-containing protein ZFN-like 3
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A3L6DLC00.0A0A3L6DLC0_MAIZE; Zinc finger CCCH domain-containing protein 5
TrEMBLK7UT280.0K7UT28_MAIZE; Zinc finger CCCH domain-containing protein 58
STRINGGRMZM2G475017_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.38e-98C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]